Detail information of g342050


Location
GeneChrStartEndStrand
g342050Scaffold_69701:HRSCAF_452787469209483807-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrOAY85237.12.7e-37Homeobox-leucine zipper protein ROC8
SwissprotQ9LMT8.11.0e-33Protein HOMEODOMAIN GLABROUS 12
trEMBLA0A199W6Z01.9e-37Homeobox-leucine zipper protein ROC8

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G17920.145.964e-35 145HDG12homeodomain GLABROUS 12

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag342037.t1; g342050.t1; g436788.t1; g436805.t1; g92394.t1
Allium fistulosumAfisC1G04029; AfisC1G05844; AfisC5G01864
Allium sativumAsa4G04746.1; Asa4G04748.1; Asa4G04750.1; Asa4G04752.1; Asa4G04755.1; Asa4G04756.1; Asa4G04757.1; Asa7G00687.1; Asa7G03531.1; Asa7G03533.1; Asa7G03536.1; Asa7G07700.1; Asa7G07701.1
Arabidopsis thaliana
Oryza sativaLOC_Os07g47130.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF01852.16STARTDomain13124075.14.5e-21

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000902Pcell morphogenesis
GO:0000904Pcell morphogenesis involved in differentiation
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0001067Fregulatory region nucleic acid binding
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003690Fdouble-stranded DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0009888Ptissue development
GO:0008150Pbiological_process
GO:0009664Pplant-type cell wall organization
GO:0009791Ppost-embryonic development
GO:0009827Pplant-type cell wall modification
GO:0009828Pplant-type cell wall loosening
GO:0009889Pregulation of biosynthetic process
GO:0009908Pflower development
GO:0009987Pcellular process
GO:0010026Ptrichome differentiation
GO:0010090Ptrichome morphogenesis
GO:0010091Ptrichome branching
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0044212Ftranscription regulatory region DNA binding
GO:0016043Pcellular component organization
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032989Pcellular component morphogenesis
GO:0042545Pcell wall modification
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045229Pexternal encapsulating structure organization
GO:0045595Pregulation of cell differentiation
GO:0045596Pnegative regulation of cell differentiation
GO:0048367Pshoot system development
GO:0048437Pfloral organ development
GO:0048468Pcell development
GO:0048497Pmaintenance of floral organ identity
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0051093Pnegative regulation of developmental process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0071554Pcell wall organization or biogenesis
GO:0071555Pcell wall organization
GO:0071669Pplant-type cell wall organization or biogenesis
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090558Pplant epidermis development
GO:0090567Preproductive shoot system development
GO:0090626Pplant epidermis morphogenesis
GO:0097159Forganic cyclic compound binding
GO:0099402Pplant organ development
GO:1901363Fheterocyclic compound binding
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090700
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09338HD-ZIP; homeobox-leucine zipper proteinEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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