result

Gene information

Detail information of g342868

Location

Gene	Chr	Start	End	Strand
g342868	Scaffold_69811:HRSCAF_452897	71160	72550	-

Sequences

CDS

Protein

Gene

>g342868.t1
ATGGACGCCGTCGACTGGGATCTTTCCGCCGTTGTCAGAAGCTGTTCCTCCAAAGTCAAATGTCCAAAAGTCAACGATACGTTGACTTTTCAATTCAAGGAAGTTGAAGAGAGAGAACTCAGAGAAGCGATGCTGTTTAGCGGGTTTCCAAACGGGTTCGGCGAGAGCTGCTCCAGATTTGTCGGGTTGGAGGAGCTTTGCAACCCGTTTATGCTATCCGTAAATAAGCAGTGTCAGAGTAACCTGCAGTTGTGTTCTAGGGCGAATAAACCGCAGCAGGTGGCGAGGAATAAGAGAAGGTAATAATAAATTAAATTTTTGATGGGGTTTTGAAATCTATGCAAGCTTTGAATTGAATACTTACGCTGAATGTGTATTTCTTGAAAAATGTGTGTAGGAAGAAGCAGGTGAAGAAAGTGGTGTGTCAAGTGCCAGTAGATGGGGTTGCGCCGGATCCATGGAGTTGGAGAAAGTACGGCCAGAAACCGATTAAAGGATCCCCCTTTCCCAGGTATGTATTCGTTTATTTATTTTTGTTTGTCGTTCACATAAAGAAGCATATTATCTGAAATCATTTTGATTATTTTATTCATCAAGCAACACATGTCAAGTTTTACATTTGGTAGGTAGGGGGAGCTGACATAATTAGGATCAAGAAAGTGAAATTGCTATAAAATTATCTTCTTTAAGAAAATTTACACTTTTTTTTTAATGTGTGTATTTCAAAATCATGAATTTTTGAATTACCGAGGTTGGAAAATTATATGTAACACAGACCATCATAACCATTCATATATCAAAGAGAGAGATCACTAACAAATTCCCTCTCATAAAGTAGTAATTGTCACATAGAACAAAAAAGAATATTTAGTTCTTTTTTATGCTTTAACACAGAAGAACAAAGTAACAATACATATATACTTTTGGTAAATCTTAGTTTAATTATTTAATGTTGAATGAACAGGGGCTACTACAGATGCAGCAGCATAAGAGGATGCCCCGCTCGAAAACAAGTGGAACGCAACAAAATCGACCCTGCACAACTCATTATAACCTACACTTCAGAACACAACCACCCAATGCCTCCAAAGCACCGCATCTCTAATTCAACTGTCACCACATCCGGCACCAAGTGCAAAGACGATGCTAACCTCATGTCTTCTCCCACTACTTCCACTTCAATGGACGAAGAGGACAAAGAAGTAGAAGAAGATGTGTTAATGGTGGAGGACATGGAAATGATTGGGGAGGACGAATTGGTGTTTACAGGGAGCGGGGAATCGAATTCATCGTGCTTTTTTGAAGATGTTGGTTTGTTAGATGATAGGATATTTGACTCACATTGGCTTGAGAAGGGTAGCAACGGTAACGCTACAGCTGCGGCTTGTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020266850.1	7.9e-55	WRKY transcription factor 22-like
Swissprot	O04609.1	2.5e-29	WRKY DNA-binding protein 22
trEMBL	A0A5P1FUA4	5.7e-55	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G01250.1	41.20	1e-34	143	AtWRKY22;WRKY22	WRKY family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g342868	AT4G01250.1	250	118	11	3	233	2	241	41.20	1e-34	143
g342868	AT2G34830.1	91	21	2	98	178	186	275	64.84	1e-29	126
g342868	AT1G30650.1	91	20	2	98	178	188	277	65.93	3e-29	125

Ortholog group

Species	Genes
Allium cepa	g108047.t1; g342868.t1
Allium fistulosum	AfisC2G04090
Allium sativum	Asa6G01743.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	119	176	85.4	2.2e-24

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0007568	P	aging
GO:0008150	P	biological_process
GO:0042493	P	response to drug
GO:0009889	P	regulation of biosynthetic process
GO:0010033	P	response to organic substance
GO:0010150	P	leaf senescence
GO:0010200	P	response to chitin
GO:0010243	P	response to organonitrogen compound
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042221	P	response to chemical
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0099402	P	plant organ development
GO:1901698	P	response to nitrogen compound
GO:1901700	P	response to oxygen-containing compound
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090693
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13425	WRKY22; WRKY transcription factor 22	EC:-	MAPK signaling pathway - plant	ko04016
K13425	WRKY22; WRKY transcription factor 22	EC:-	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network