Detail information of g348082


Location
GeneChrStartEndStrand
g348082Scaffold_70395:HRSCAF_453481460436461209+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrVAH91002.11.7e-27unnamed protein product
SwissprotO65639.12.2e-24Cold shock domain-containing protein 1
trEMBLC0P2C31.3e-26Glycine-rich protein 2-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT4G36020.150.182e-55 212AtCSP1;CSDP1;CSP1cold shock domain protein 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag10454.t1; g120176.t1; g148718.t1; g248655.t1; g248657.t1; g348082.t1; g453915.t1
Allium fistulosumAfisC2G05726; AfisC3G00629; AfisC3G01992; AfisC3G06581; AfisC4G03750; AfisC8G03465
Allium sativumAsa1G01832.1; Asa1G01835.1; Asa1G01836.1; Asa2G01676.1; Asa2G05513.1; Asa4G03011.1; Asa4G03092.1; Asa5G05426.1; Asa6G03182.1; Asa7G07413.1
Arabidopsis thalianaAT2G17870.1; AT2G21060.1; AT4G38680.1
Oryza sativaLOC_Os01g36570.1; LOC_Os02g02870.1; LOC_Os08g03520.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00313.19CSDDomain56986.19.7e-25
PF00098.20zf-CCHCDomain9110733.32.9e-08
PF00098.20zf-CCHCDomain12013426.25.1e-06
PF00098.20zf-CCHCDomain14816230.52.2e-07
PF00098.20zf-CCHCDomain17719232.07.5e-08
PF00098.20zf-CCHCDomain20622130.62e-07
PF00098.20zf-CCHCDomain23625228.78.4e-07

Gene Ontology
AccessionOntologyName
---

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09250CNBP; cellular nucleic acid-binding proteinEC:- --
K18754LIN28; protein lin-28EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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