result

Gene information

Detail information of g35619

Location

Gene	Chr	Start	End	Strand
g35619	Scaffold_21177:HRSCAF_204669	40220	41767	+

Sequences

CDS

Protein

Gene

>g35619.t1
ATGCCTGATCGAGCTGACCCCTTGGACCCAAAGTATTCGAAAGAAGGTGATGGTACACAGCTAACTGCTGAATCCAGCACGGTCACGAAAATTGGTATGCCTCTTTGTCAACACTCCATCCATTCCTGTAACGATATCTGACAAACATTTTACCTATCGACACTCTGCTTTTATTGCCCAGGTGTGATAAACACAGAAAAGATTAAAGTTAAACAGGTCTGCATTCCAACCCACACTCCACCCTTATTTCCACATAACACAGTAACTGACTACCATATATACTACTGTAGGAGACTGACGACTATTTACAAGACGGCGGCATAACTGAACACACCATCGGACGGAAGAATGAGCCTAACTGTCACATGCAGCCTGATGGTAAGCAGAAAAAACATGGACGACTGAGTGGAAGTAAGAGGAAGAAGTAGGCAGCCATGACGGCAATCGCAAGGCGCATTATCGTACGCCCGCAGCACCATCCTACCTCTGTGTTACCCAGTCCTAAATTTTCTGCTCTGTCTGCAACTGTCCAACTGTATTTAATCACTGCATATGTTTGTGTTTGTTTAAAGATCTGTACGGTTGTACCCCTGTATTTTCAGTGTATTAAATGACAATTATTAATCCGGTCCAATTATGGCTCGCATTTATACCCACTTCACTTTACTACTAACCACTTCTAATTTAAACATTCTGCAATACTACAAACAGAGTTAAGATGCACGTTTGGTTCCGCTTTTATTCTTTTCGCCACCACATATACTTTTCATTACTAAAAAATTTCACGAATCTTTCGTATATTCGAAAGCAGTTTACTGCATATATATTTCGTACGTACTTCACTGCATATACATTTCATTAGTACATACATATTTCGTACGCACTTTACAACAGTATGGTTTGGTCAGTAAAAAATTTTGCACATATTTATTACTCCCTCTTGCGCGTCTTATTTCTGTACTACCATATTACACTGACAAGAAATTGTCAACTCAATGTCCTGCATGAATCAAACTTCAGTATGAGCTAATTCCACTATTTGTGCATCCATTGTTTACTTAGCAGTATAGACAAATATTCATAAGATAATGTAAGATGTACACTTATCTTGCACAAGGTTAAACAGTACACAAGTTTTTTTTTCTGCCTAACTTTGATATCATACTTCAGATGTAAACTGTCATGTTGTCAAGCAGGTTTTATTAACTTTTTCCCACATTTGATTTACCACCATTTTTATCTGTATATTTCAATCTTTGCGGTAACTTTGGAATGAATTCTTCCTGTGTACGCAGCCGCCTCGCTCAAAGATCAATTCATCTTCCTCATCGAGCTGCCATGCCTAAACAAATTCATGAGATCAAGGATTTCCTTCTGACTGCAAGAAGGAAGGATGCTAGATCAGTTAAAATCAAGATGAGCAAGGATGTAACCAAATTCAAGGTTCGCTGCTCCAAGTATCTGTACACATTGTGCGTGGCTGATGCAGAAAAGGCAAAGAAGCTTAAACAATCTCTTCCTCCAGGTTTGCCCATTCAAGATCTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	TYG55132.1	1.4e-25	hypothetical protein ES288_D09G247400v1, partial
Swissprot	O22860.1	5.4e-27	60S ribosomal protein L38
trEMBL	A0A2N9GKW6	4.5e-26	60S ribosomal protein L38

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G43460.1	86.96	2e-29	125		Ribosomal L38e protein family

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g35619	AT3G59540.1	69	9	0	103	171	1	69	86.96	2e-29	125
g35619	AT2G43460.1	69	9	0	103	171	1	69	86.96	2e-29	125

Ortholog group

Species	Genes
Allium cepa	g106141.t1; g112901.t1; g115463.t1; g116373.t1; g116396.t1; g116398.t1; g134686.t1; g135123.t1; g139391.t1; g140240.t1; g161441.t1; g164289.t1; g177160.t1; g201656.t1; g203306.t1; g205935.t1; g233077.t1; g233169.t1; g238300.t1; g254215.t1; g265403.t1; g275278.t1; g280075.t1; g284280.t1; g294708.t1; g299193.t1; g304789.t1; g306986.t1; g308420.t1; g309411.t1; g309508.t1; g319886.t1; g332412.t1; g340261.t1; g342147.t1; g348061.t1; g35619.t1; g35620.t1; g358237.t1; g359054.t1; g365724.t1; g366735.t1; g373580.t1; g383914.t1; g413303.t1; g415116.t1; g415411.t1; g42975.t1; g437213.t1; g439713.t1; g442471.t1; g444106.t1; g445988.t1; g453602.t1; g454555.t1; g454787.t1; g454788.t1; g48054.t1; g489497.t1; g495310.t1; g503734.t1; g510653.t1; g514083.t1; g514084.t1; g534000.t1; g53664.t1; g73992.t1; g77413.t1; g82907.t1; g82910.t1; g83149.t1; g86770.t1; g92788.t1; g9857.t1
Allium fistulosum	AfisC1G01040; AfisC1G01306; AfisC1G01396; AfisC1G03376; AfisC1G03575; AfisC1G03622; AfisC1G03835; AfisC1G04569; AfisC1G04748; AfisC1G05166; AfisC1G05601; AfisC1G05873; AfisC1G06106; AfisC1G07106; AfisC1G07354; AfisC1G08467; AfisC1G08899; AfisC1G08985; AfisC2G02445; AfisC2G02793; AfisC2G03877; AfisC2G04843; AfisC2G05412; AfisC2G05678; AfisC2G06296; AfisC2G06915; AfisC2G07411; AfisC3G00999; AfisC3G01639; AfisC3G01981; AfisC3G02791; AfisC3G03023; AfisC3G03514; AfisC3G03600; AfisC3G03707; AfisC3G04175; AfisC3G04383; AfisC3G04384; AfisC3G04737; AfisC3G05359; AfisC3G05549; AfisC3G05706; AfisC3G06870; AfisC3G07087; AfisC3G07212; AfisC3G07671; AfisC4G00790; AfisC4G03144; AfisC4G04786; AfisC4G05254; AfisC5G00917; AfisC5G01190; AfisC5G01592; AfisC5G02036; AfisC5G05192; AfisC5G05528; AfisC5G05927; AfisC5G05966; AfisC5G06445; AfisC5G06593; AfisC6G00059; AfisC6G00403; AfisC6G00514; AfisC6G01518; AfisC6G02461; AfisC6G04076; AfisC6G04247; AfisC6G06207; AfisC7G01821; AfisC7G02180; AfisC7G02555; AfisC7G02617; AfisC7G03271; AfisC7G05545; AfisC8G00616; AfisC8G01179; AfisC8G01196; AfisC8G01218; AfisC8G01579; AfisC8G01643; AfisC8G01871; AfisC8G02026; AfisC8G02309; AfisC8G02566; AfisC8G02578; AfisC8G02713; AfisC8G02725; AfisC8G04470; AfisC8G05662
Allium sativum	Asa0G00028.1; Asa1G02992.1; Asa2G00250.1; Asa2G03564.1; Asa4G04199.1; Asa5G02336.1; Asa5G04339.1; Asa5G04340.1; Asa6G04329.1
Arabidopsis thaliana
Oryza sativa	LOC_Os11g47400.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01781.15	Ribosomal_L38e	Family	104	170	114.5	1.6e-33

Gene Ontology

Accession	Ontology	Name
GO:0022625	C	cytosolic large ribosomal subunit
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003723	F	RNA binding
GO:0003735	F	structural constituent of ribosome
GO:0005829	C	cytosol
GO:0005198	F	structural molecule activity
GO:0005488	F	binding
GO:0005840	C	ribosome
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0006412	P	translation
GO:0006518	P	peptide metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009058	P	biosynthetic process
GO:0009059	P	macromolecule biosynthetic process
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0022607	P	cellular component assembly
GO:0015934	C	large ribosomal subunit
GO:0016043	P	cellular component organization
GO:0019538	P	protein metabolic process
GO:0022613	P	ribonucleoprotein complex biogenesis
GO:0022618	P	ribonucleoprotein complex assembly
GO:0022626	C	cytosolic ribosome
GO:0032991	C	macromolecular complex
GO:0034622	P	cellular macromolecular complex assembly
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0043043	P	peptide biosynthetic process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043603	P	cellular amide metabolic process
GO:0043604	P	amide biosynthetic process
GO:0043933	P	macromolecular complex subunit organization
GO:0044085	P	cellular component biogenesis
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044271	P	cellular nitrogen compound biosynthetic process
GO:0044391	C	ribosomal subunit
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044445	C	cytosolic part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0065003	P	macromolecular complex assembly
GO:0071704	P	organic substance metabolic process
GO:0071826	P	ribonucleoprotein complex subunit organization
GO:0071840	P	cellular component organization or biogenesis
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1901564	P	organonitrogen compound metabolic process
GO:1901566	P	organonitrogen compound biosynthetic process
GO:1901576	P	organic substance biosynthetic process
GO:1990904	C	ribonucleoprotein complex

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K02923	RP-L38e, RPL38; large subunit ribosomal protein L38e	EC:-	Ribosome	ko03010

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network