result

Gene information

Detail information of g368194

Location

Gene	Chr	Start	End	Strand
g368194	Scaffold_72845:HRSCAF_455931	280118	286301	-

Sequences

CDS

>g368194.t1
ATGGGGACAGTTACCGGCATTGGTGATTTAGATCCAGTGCGCTGGCCAAACTCCCAGTGGAGGTCAGTCAAGGTCGGCTGGGATGAATCAACAGCTGGTGACAGGCAACCTAGGGTTTCACTTTGGGAAATCGAGCCTTTAACAACGTTTCCTATGTATCCCTCTTTGTTTCCTCTCAGGCTTAAAAGACCATGGCACAGTGGCTTACCTTTTCATCATGAAAACATGGAAGCTGAGAACAATAGTTTAATGTGGATGAGAGGAGACGATAGAGATCGGCCACTTCATCCTTTGCATTACCAGTCACTTACAATGGACCCTTACATTCAGCAGCAGATGCTATCTGCCGCAGCTTTACAAGACATGAGAGGAGGCAACGATTTTCTCAAGCAACAGTTGCTGCAGTATCAGCAACCTTTTCAGTTTCCACAACAGTCTTCTTTACCCACACACCCAATGCAATCATTTCTCAATCAGACATCGCCTCAACAAGTCATATCAGAAAATCGTAACCCACAGATGTTTCAATTCCACGGTGACTATTTGCAGCAGAATAAACCGATGGTGTCTTCTCAGTTATGCCAAAACTTGCTTTTTAATGATTCAGGCACAAATTTTTCATCACTTCCAAATGTTATGAATATGTCAAGAGTTGGTCAAACCATGAGCGAGCCTAGTCAGCAACCATGGGAACCAAAACTCACCATGAATCGAACTGGTACTTTTGGAAATTCTTCTTCTTCGATGCTTTCTAATGCAGTGCCGAGTATAGCTGGCAATGTGTTCGATTCTAATGTTAATGATGGCCAGTATGAAAGTTCATGCATTCAGAACTCACTTTATGGGTATTTGGATCCGGCATTGGACTTGGTGCCAAATGGAGATGAAATTGATCAAACGACTAAAACCTTTGTGAAGGTTTATAAAACCGGATCAGTAGGACGATCGCTAGACATCTCTCGCTTCAGTAGCTATGAAGAGTTACGTGAAGAATTGAGTCAGATGTTTAATATTGAGGGTCTCTTGGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACGTTCTTCTCCTTGGAGATGACCCGTGGGAGCCTGTTCCATGGGATGAAGTTTGGACGATGGTATTGTGTCGATGGATATGGAATAGTTCGATAGCGGTGACCATGATCGATGGTGAGGTGATGTGGGATTGTGAGCTAAAGACAAGCATCATTTCTTCTCATTATCCCTCCACCTACGACCTCTATGCTATCACTTCTCCTCGTCATCTTCAATATCCAACTTCACCCTCATCACAATCACGTCCATCGCCATCATCATCCCCTCCATCATCTTTGCAACCACCTCCTCCATCGTCTGTGGTTGCCACCGTAAACTAA

Protein

Gene

>g368194.t1
ATGGGGACAGTTACCGGCATTGGTGATTTAGATCCAGTGCGCTGGCCAAACTCCCAGTGGAGGTCAGTCAAGGTAAATATTACAATGCATTAATTTTCATATACAAATTGAAAGGATGTATATAAACCAGCCAGATATGTTTTTCTTAAGAATGTGCAAGAAAGTTGAAATGGTGTCATGTATGAATTAGGTCGGCTGGGATGAATCAACAGCTGGTGACAGGCAACCTAGGGTTTCACTTTGGGAAATCGAGCCTTTAACAACGTTTCCTATGTATCCCTCTTTGTTTCCTCTCAGGCTTAAAAGACCATGGCACAGTGGCTTACCTTTTCATCATGGTATTCTGTGCATCATTTGCATTGTTTCCCTGCAATCTGTACTTTTGAATTTCTAACAATCCCACCTACACACACATTTCCACACGTTGCATTTTGTGAGTTTATATACTTTCTGTTGTTATCTTCATAGTCAACCTTGCTTATTTTAACAATAATATAAAAGTGCTTTTGGTAAAATGTTTGAGAACAAAGAATGTGGAGACCAAACGCATGATTTTCTTATTTGTTTAAAGATATAAATTTTGGATTGGCAAAATAGTCAATAAAACTGTTTGCAACTAGTGGGGACAATCTGTCGAACACATACTATATATTTCCATTACGTATATCTCAACTGATCCTATTTATGTCCCTTCAGAAAACATGGAAGCTGAGAACAATAGTTTAATGTGGATGAGAGGAGACGATAGAGATCGGCCACTTCATCCTTTGCATTACCAGTCACTTACAATGGACCCTTACATTCAGCAGCAGATGCTATCTGCCGCAGCTTTACAAGACATGAGAGGAGGCAACGATTTTCTCAAGCAACAGTTGCTGCAGTATCAGCAACCTTTTCAGTTTCCACAACAGTCTTCTTTACCCACACACCCAATGCAATCATTTCTCAATCAGACATCGCCTCAACAAGTCATATCAGAAAATCGTAACCCACAGATGTTTCAATTCCACGGTGACTATTTGCAGCAGAATAAACCGATGGTGTCTTCTCAGTTATGCCAAAACTTGCTTTTTAATGATTCAGGTGTGAAAAATAATTAATATACCCACAATTTATTATGTGGTTAACGATTAAACTCGTGTACATACTAACCATGACTATAAATAAACACATAAACATACTTTTACTTATCGTTGCTTGACAATAAATGAATAAAGATGACAACAGACGATTATTGTAATACATATTCTTGCCTACTTCATTTCTTTTTACTCTCTTGATGTTCAAGAGATTGACTAATTTGATATTAGGCTTATGTTGCCAATTTTTTGAAATTATGGGCAAGGCACTCCCTTTAAATAATTCCAACAGTCATTGATTTGTAATAATTGTTACCACCATTTCTAATTTATATATATTAATATTTATATTTAACTTAAATGCAGTAGTTCTTTAGAAGATAGGTGCCAATATGTATATAGATAGATATATATTTATGCTAGAGTAGAGCACCCTCAATGCCGAGTAGGAAGCTTTTTGATGTGGCACTATGTGTCAGTTAATATATTCACTTCACCTCCAATAAGCATAGATGTATGTATGTACGTATGCGCGTGCGCACAGACAAACGCATGCTCGCACGCCCCCGCGCATATGCTTAGGTGTACACACACACACATATGCATATGTATATTTATATTTATATACGTGTGTGTGTGTGTGTGTTGTCCATAAAATATGGATTCTGATTGATTCATTGACTTATCCGATGTTACCGAGTTAGCTTTTTGCTATACAGTAGAAGAAAATGGGTAATGGTCATTTACTTACCCTGTTAAGGTATTTTGCGAAGATTGATACTTGCAACTGTTAGACAAAATATGACAATGTGAGTCACTTATGTGTTATTTTGAACAACAGGCACAAATTTTTCATCACTTCCAAATGTTATGAATATGTCAAGAGTTGGTCAAACCATGAGCGAGCCTAGTCAGCAACCATGGGAACCAAAACTCACCATGAATCGAACTGGTACTTTTGGAAGTACGAATTTACTACAATCGTTTTCTGAGAAAAATGGCTGTGTGGGTGTTGATAACTGTAACACTGGTTCTCACAATCAGCAGAATGTGTTTGGTTTGAATGTAGATTCTTCTTCTTCGATGCTTTCTAATGCAGTGCCGAGTATAGCTGGCAATGTGTTCGATTCTAATGTTAATGATGGCCAGTATGAAAGTTCATGCATTCAGAACTCACTTTATGGGTATTTGGATCCGGCATTGGACTTGGTGCCAAATGGAGATGAAATTGATCAAACGACTAAAACCTTTGTGAAGGTAAAAACAATCATATGTTTTCTATCAACCACATAGGCTTCCTGTAGTTTTATCTAAATTGGAAAGCTTTAATTCCCTTGAAGACTACTAGTTCTTTGCATGTGAGCTCGTACTATTGTTCATGTTCACATATATTCATCCTTTTGCTAGAAACAAACTTTTCTCTTTGAATACCTGAAGAAACAAATTATTTTTAATCCAACTAAAGGATCAATTCCTCTTTCTTTCTTTTCCTTTCTTTCTTCTTCCTCCTCCTTTTTTTTGACGGGGAGACTTTTTTTAACAGAGTTTTCGAACATTTTTTTTTGTATTGAAATTTCCACTATTTGATTTCCTTTATTAAAAAAATGAAAATGTTTGCGTTCCTTGTTAAGCTGCAAGTTCCCATACCACTTTGGCTAGAAATGGGTATTTGGGATTCGTGCTACATTCTTTTTACCATAGATGAAATAATTGAAAATAAATGAATTCAAACCTAGTAGCATAAATGACTGCTACTTGGGCAATATTGAAGTAAACTGCATGATGAGTATATTGCCTTGTTTTTCTACTTAGCATCATTAAATATATTATCAATAAATTTGCAGGTTTATAAAACCGGATCAGTAGGACGATCGCTAGACATCTCTCGCTTCAGTAGCTATGAAGAGTTACGTGAAGAATTGAGTCAGATGTTTAATATTGAGGGTCTCTTGGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACGTTCTTCTCCTTGGAGATGACCCGTGGGAGTAAGTATACACAACTCTTTGACATTTACTATGCTTTTTTCCTTCATCATTTGCTCTATGATTTTTGTATCTTTATGTACGGCCTTCCAATTCATCCATGATTGCACATTGCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATTATATTATATATATATAGTATATACTATTATTATATATCAGGCCATATGTCTCAAAATTTTAAGTGAGGAATTGTTCATATAACGATACTCGGACTAATTATGGCAAAAAGGACTTCATTGTTGTCACTGAGATTTAGGCTTTTTATATTTTGCTTGCCATCTTTGGGGGAACATGACCTATCCCTCTGGAAAAGGCACCCCTATTAGGGTTATTATTAACACTAAGTGGAACACCTAACCCAATTGATAGTACTTAGCAAAAATAGCCTGGGGCCCCCCTGTAACACCGCTACGGCGCCGAGTCGCCCGCGGGCACCGGGTATGGATATTATAATGCACACATGTAATGATAGTTTAATTTACTAATTTTTGAACTTCAAAATGAATATAATGCTTTATTTATGTAATGCTAGTTTGGTTGGCGCTTTTTGCTTCTTACTTTTTTTTAGTCATTTTCGATGCCGGTGTAATCTTGTGCGATGGCGTGGTGATATACTGTAGTGGTGAGATCCGGTGGTGACTTGGATTTTTTGTGAATAAGTTCCATGGCAAAAGTGTCGGGTTGGGTTGACCCTTCTATTAAACGGGTCGGCTCGGGTTAACCCGTTTATTAAATGGGTCAACGGGATCGGATTTGTTTATGTTTTGTATAGATCGGGTCAAATTTTACCCAACACATTTATAATTCGATCTGACCCATTTGACAGGCCTGTTCCATGGGATGAAGTTTGGACGATGGTATTGTGTCGATGGATATGGAATAGTTCGATAGCGGTGACCATGATCGATGGTGAGGTGATGTGGGATTGTGAGCTAAAGACAAGGTTGATGCTGACGTAAGAAGATGTGGGTTGGTCTTTCAATCTAAAATTTACAGCTTGCATCTTATATTTTTAAAAATTATTAGTGCTTATCCTTTTGGTTAATCCCCTCAAACTAGAAAATGTCAAAATCCTTTAAATACTTTATTAGATGTATAGTTGATTGACAAAAATAGTAAAGCAAAATTTAAGAAAAGATATATACACAAAATATTTTCTGTAAAAATAGATGCACCTAAATACCCGTTCCTATTATTGCACACCAATCTAAACTCTTATTATTTGTAGCTATTAGGATACGAACTCATTTTAGTTTCAACAAGTAGGGTGGATTAAGCACACATTCAAAAATAATTAATTGCATCTATGATAAGAACTTAATGATCAATAAGTGAACTCCAAGTTGCATAAGAAGTATTAAAGTACATAAATATCATGTACGACACGTATTTATTTATTTATTAAAAGGTTTTTTGACAATTGAATCTCATTATTGTTACATAAGATGTTAAGTTTAGGCAGAGATATGATTTCTCATACCTTTTTGTCACCAATTTGTATTCTGGTGGACTTCTCTCTCCCACCTCCCCTCCCTCCACTGCATGCACACACAAATATGCTTGTATGCATGCACGCTATTAAAATACGTTCAAGGAAACATCATATCAAAATTAAAAAGAAAAGATGAATCTATTTTCATCTCATGACGATGCAAAACTTATCTCCAATTTTTACTAATCGGTATGGAAATTATTTTTGTGGACAAAAACTAAACAAATTTAGTTCGTAACTTTATATGGCACCACTTTCATAAATCAACCGTAAGTATAGAAAAAATTATTTTTAGAATTTTTCCTTTTTTCTTCAAATCAAAACCGCCCAATCGTACATGCATGCTTCTCCGCATAAATCAATACCATTCGATTGTAGGCATTTACTTCTTTACCTTGTTGTCATATCTCACGTCTCCTCCTTCTTATCATCACTTCACCAATTTGTTTGATCTTGATCTTCAAATAATACTCTGAATATCCTCTTCCTTGTTACAACTCAAAGCCTCCACATAAATATTCTGGGCTTGTTACAACTCAAAGCCTCCACATAAATATTCTGGGCACATTACTATATCATCCTTGTTGCCGCATCTCACATCAACTCCTTAAACACCTTCCCTTCCTCCATATCATCGTCAATTTATATATAACAACTATAAAATGTTATATAAAAGTAACATTATATATCTTCAACTATAGTTTGTAACTACTATATTAAATTATCATTGTATTTAAATAACATTATTAAAAGTACTAATAAATATACAGTGTTAAAGATTTCCTTTATTGGTAATGTAATTGGTCGTGCATGTAGCATTCGCCGGCAAGAGCAATAGTTTGATGCATATTGGCTAAGCTTTATGCGAATATATTTAGAATGTTCTAATGGCACAATCCATACTTTCTCAAAGTTTACAGGCATAGTTGGTTATGCGAGACTTGAAAAAAGATATAGTGTAAGAGTCGTTAATATTGTGCAAATGTAGTACAAATTTAGTTGTCAAAATGCTACATAAAATAAGAATGTAATAGCTCTCAAATATTATTTTCAAACAACATTATAAATAAAATAATGCAAGGAAGTATTGTGAAAAATGGTGAATAATACCTATTAAATAAAATTATTATATTAGTTAACCACATTAGCTTAACTGAACCCAATAGTTAAGAAAATAACAATAAATCCACATTCACAAATCGCAATTTCCAGTATATATCATGCCTTTACAAAATTCGAGTAGTGTATGTCTGTGTATGTGTATACACACACACACAAATAACATTATAAGCTTTATTATCCATCTTTCTACTAAAAAGGTTTAATTTATCGAATGTTATTATGATACAGCGTATCGATAACATTCTACGTCAGCATCATTTCTTCTCATTATCCCTCCACCTACGACCTCTATGCTATCACTTCTCCTCGTCATCTTCAATATCCAACTTCACCCTCATCACAATCACGTCCATCGCCATCATCATCCCCTCCATCATCTTTGCAACCACCTCCTCCATCGTCTGTGGTTGCCACCGTAAACTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247777.1	1.6e-124	auxin response factor 12-like isoform X1
Swissprot	Q258Y5.1	8.8e-80	OsARF8
trEMBL	A0A5P1E5F3	4.9e-120	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G37020.2	41.59	3e-77	286	ARF8;ATARF8	auxin response factor 8

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g368194	AT5G37020.2	464	175	14	1	370	312	773	41.59	3e-77	286
g368194	AT5G37020.1	464	175	14	1	370	312	773	41.59	4e-77	285
g368194	AT1G30330.2	167	50	4	1	146	315	475	53.89	4e-39	159

Ortholog group

Species	Genes
Allium cepa	g12592.t1; g310582.t1; g368194.t1; g430391.t1; g486722.t1
Allium fistulosum	AfisC4G03920; AfisC5G07026; AfisC7G04154; AfisC8G04152
Allium sativum	Asa0G02535.1; Asa3G01681.1; Asa4G03108.1
Arabidopsis thaliana	AT1G30330.1; AT1G30330.2; AT5G37020.1; AT5G37020.2
Oryza sativa	LOC_Os02g06910.1; LOC_Os04g57610.1; LOC_Os04g57610.3; LOC_Os06g46410.1; LOC_Os06g46410.2; LOC_Os12g41950.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06507.10	Auxin_resp	Family	1	24	24.6	1.9e-05

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0010033	P	response to organic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048367	P	shoot system development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network