result

Gene information

Detail information of g37576

Location

Gene	Chr	Start	End	Strand
g37576	CHR6	204939450	204941301	-

Sequences

CDS

Protein

Gene

>g37576.t1
ATGAATCCTTTTGATTCTTCTTCTTCTTCTGCTTGCTATCAGAAAGTTGAGTTTAGCAATGGCGAAGATTCTGGTGCTGGAAGTGAAGTAAGTTTCTTCCTCTTTTCCTACTTAAATTGTACAATTAGTACTATATATTTTGATTTTTGCACATGCTACAAGTGCTATTCCTGTGAATTTAAAGCACGGCCAGACAATATCATTGAAGATGCTTGACTTTGTCATAACTGAAACATTAATTGATTAAGATGTTCATGTGCAATTAACAAAGTAATTAGCACTTGTTCCTAATTAAAGCAGATTACTATAAAAGATTCATATCGATCATTTTAATTTTGTGATTATACAATATTAGGAGGGTCTTGATATGGCAGATGAGCCCATGAAGACAAACCCCCACAGATCAGGGTCAAAGAGAAGTAGGGCTGCTGAAGTTCACAATATGTCTGAAAAGGTAATATATTTTGTAACTGAATATTTTGGCTTGTTTTGAACATGATATATAATGTTTAATGTATAGAGAAGGAGAAGCAGGATCAATGAAAAGATGAAGGCACTGCAAAATTTGATTCCTAACTCTAACAAGGTACGTTTTTTTTTTCTTGCGTTTTCATAGCGGTTATATTTATGTTATTATTATTCAATCAATTCTTAATTTTGGCTTGTGGGGTTTATTTACGAGAAGACTGATAAGGCATCTATGCTTGACGAGGCCATCGAGTATCTTAAACAATTACAGCTTCAAGTGCAGGTTAGCATGAAATTTTAAATATATTATGAGTTGTTACATTGAAGTGGAGTTTTACTTGATTTGAATTTAACCGTGTAGCTGGCGTATTTATAGTGGTATCGTTAAGGATCCCTATTAACTAATGAATATCAAATAATTTCTACATTAAGACATGGTAATCCTGCTCTTTAAATTGAATCTTACAACAAAATTAGATTATTATTCCAACCCAAACTTTCTAACTTTGATTCCCACTAACTGTATGTCCGCAATATACATTATGTATGATGTATCCTATGTCTGTTGGAGAATATTGTGTATTATGAGCGTTTTAATATGCTTCAAATTGGAAATTTTTATTCCTTCTGCATCAGTAATATAAATTTAAAAGGGAACTTTTGTACAACAACCTCTTTTAAATTTCAAAATACACACCAGACTCGTTCCAAAATATTTATAAGAAAAAAAAATCTATACTGTATGAAAAATGATCTTGCCATAATTTCTGATTGGAGAGTTATATGGATGGACATCTTTGAAAGTGGCTATCATCTTGTATATACGAACTACTGAAAATTAGTTTGTTAATCATTGAAAATTATATATGGATAAATTTTCCTGGAACCATCAAAGATTGTTATTCCTTATTTGTGGATTCATGGAACATTTTTTAGCAGTGTCTACATCGGCGATTTTCCCAAACACTAAGTAAACGTGTCGTCATTGTGTTTATGAGTTATTCATCTAGCAAACTTTTAAAATAGACATAACGGTATGTATCACTGAAACATTGTAACACAACAATTTCTGAGCATGATGAGAAATGGAATGAGTTTAATTTCTTCAAATGCGATGTCTTATCTTTCTTCAGTGATGATGATGATGATGCATAGTGCATGTTTCTTTACTACAACATTTTTAACCCACAGATGCTATCAATGAGGAATGGACTAAATTCTCACCCAATGTATTTGCCAAGCTCTCTGCATTCACTTCAAGCTTCTCAAATGCACATGAATTTTGGAGAAAACAACACATCAGTTGTTAACTTGGCAGTGTTAGGAATGCTACCACCTCCGAATCAAAACTCTTCAATCAATGCCTCTTTCGATCTTACAATTAGAAACACAGTCTCCACTCAATCTGTCGTGCTGCCTAGTACAAGCATATCTGCTGCTGAAACTTCCTACACTTTACAAGTTCCTACTGAGGTAACTTCTTATAAATTTAATGGAGACTGTTATCCCGCTTAAATTAATTAATTCATTCTTTCTTCTTCTTCTGTATGTATGAAGGACATGTATGCCAAAAGCATGGTATCACATCAGAATTTGCATTCATTAAGGAGTACAGTTAATATACCAGGTTGCTATTTATAGTTCTATGATATTTATAGCTCAATTTGTTATATCTACCACATTTTCTTTTATAAATAAAAGTGCATGGTTTAAAAGAACATGCAGTGGAGGCGGGGTCTCTGCGATATGGTGGTGAGCATTTGGCTAATGTGCTTTCCAAGGATCTTCCAGATAACTCTATTTTTAATTAGATTTTCATTAGGTAAGTGTTCTATATGTTATTTGGTGTTTTTAAAATTGTAGAAGCATAGAGCTAAGTTATGTTTAATGTTACAGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_029122778.1	3.5e-46	transcription factor SPATULA isoform X3
Swissprot	Q9FUA4.1	2.0e-30	bHLH transcription factor bHLH024
trEMBL	A0A8K0IHJ5	1.6e-48	Transcription factor SPATULA

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36930.1	83.33	1e-34	143	SPT	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g37576	AT4G36930.1	84	13	1	51	133	196	279	83.33	1e-34	143
g37576	AT5G67110.1	79	21	0	44	122	85	163	73.42	2e-27	119
g37576	AT1G09530.2	106	25	3	22	125	321	411	60.38	2e-27	119

Ortholog group

Species	Genes
Allium cepa	g156548.t1; g37576.t1
Allium fistulosum	AfisC5G00800
Allium sativum	Asa2G05912.1; Asa6G06459.1
Arabidopsis thaliana	AT4G36930.1; AT5G67110.1; AT5G67110.2; AT5G67110.3
Oryza sativa	LOC_Os02g56140.1; LOC_Os06g06900.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	56	102	51.9	4.9e-14

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0007275	P	multicellular organism development
GO:0007623	P	circadian rhythm
GO:0008150	P	biological_process
GO:0009266	P	response to temperature stimulus
GO:0009314	P	response to radiation
GO:0009409	P	response to cold
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009639	P	response to red or far red light
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009900	P	dehiscence
GO:0009908	P	flower development
GO:0010029	P	regulation of seed germination
GO:0010047	P	fruit dehiscence
GO:0010114	P	response to red light
GO:0010154	P	fruit development
GO:0010187	P	negative regulation of seed germination
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032504	P	multicellular organism reproduction
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048440	P	carpel development
GO:0048467	P	gynoecium development
GO:0048511	P	rhythmic process
GO:0048519	P	negative regulation of biological process
GO:0048580	P	regulation of post-embryonic development
GO:0048581	P	negative regulation of post-embryonic development
GO:0048608	P	reproductive structure development
GO:0048609	P	multicellular organismal reproductive process
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051093	P	negative regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1900140	P	regulation of seedling development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network