result

Gene information

Detail information of g376837

Location

Gene	Chr	Start	End	Strand
g376837	Scaffold_73924:HRSCAF_457010	14774	17212	-

Sequences

CDS

>g376837.t1
ATGGCGCTTGCAGGCACCAGTCTGCTGAAAAGCTATCTCTTCTTCCTTTTCTTCAACATCGCCTACGCGTCAAAAGACTCTATTACCCTTGACCAATCCATTAATGGATTTCAGAAGCTCACCTCCAAAGGTGGTAAATTTGAACTAGGGTTTTTCATACCAGGAAATTCTCCATACTACTATCTCGGAATTTGGTACGGTCTTAAGTACATACCTGAACAAACTGTAGTGTGGGTTGCCCACAGAGAAACTCCCTTAGCTGAAATTTCCCAAACAACCCTTGCAATCTCCGAAAATGGAAATTTAGTTCTTGCCAACCAGACAGACCCTATGATCTGGTCCACAAACATTACCCATAATACCCCTACTGTTGTAGCAGCTGTTCTTCTTGATACTGGTAATTTTGTATTGAGAGACGCATCAAATCCTAATGTAACTTTATGGCAGAGTTTTGATCATCCTGCTCACGTTTGGCTACCTGGCAGCAAAATCGGTCTAAACAAAGTAACCAAACAGCTACAAAGGTTAACCTCCTGGAGAAATGAAGATGATCCATCCCCTGGAATTTTCAACCTTGAAATCGATCTCAATGGCACAAGTCAACTCTTCTTAATTTGGAACAACTCCCTCACCTTCTGGAGAAGTGGCACATGGAACGGTCAGGCTTTCAATCTGACCCCTGAATTTACCCCAGAATACATCTACGACTTCGATTACATTTGCAATGATAAAGAGAATTACGTAACGTACACCATATATCACGACTACACAGTCTCATCTATGATCGTCATGGGCATATCCGGTCAGATCAAGCAATTGACTTGGGTGCCAAATAACGGCTGGTTAACTTTCTGGGCCCAAATCCGCCGACAGTGCGATGTACATGCTTTATGTGGTCCATTCGGTGTCTGCAACGAGGTTGATTTACCATTTTGTAATTGTATCAGGGGGTTCAGTGAAAATTCTCGATCAGATTGGGCTTGGGGATATTGGGCTGGAGGCTGTGTTAGAAATACAAAACTGGAGTGCGAAAGCACTGGCAAGGGTGAAAAAGATCAGTACTACATGATGCCCAACACTAGAATGCCAGGTAATCCGATAAGTGCACGAGCTGCAAGTGCTTCTGATTGTGAGTTGAACTGCTTGAACGACTGTTCATGTACAGCGTACAGTTACAACTCTTCCAGTTGTTCTGTTTGGCATGGCGGTTTGCTCAATCTTCAAGAGAAGTACAATGGTCCTAATGGAGGCACTCTCTTTGTTCGCCTTGCTGCTTCCGAACCTCCGGTTGTAAACAAAAGCAAAGCGATTATAATCCCTTATGTGGTAAGCTCTACACTTGCTTTCTTGATATTTCTCATTGCTGCATGGTTGATATGTTGCTGTATGAAGAGAAGTTCACGGAAATCAAACATTACAGAAGGGGGTTTGACAGTATTTCGATACAGCGAACTGCGAAGCGCAACTAGAAATTTCTCAGATAAATTAGGAGGAGGAGGATTCGGTTCGGTTTTCAAAGGAATTCTACCCGACTCTTCGTCGATAGCCGTGAAGCAACTAGAAGGAGCGAAGCAAGGAGAAAAGCAGTTCAGAACAGAAGTGAGCACGGTCGGAATAATTCAACACCTGAATCTTGTTCGACTTCGGGGATTCTGCTCCGAAGGACTGCACAAGATGTTGGTGTACGAGTACATGCCAAATGGTTCTCTAGACAAAATACTGTACCAAATAGCACTTGGAACTGCACATGCTCTAACATATTTGCATGAGCATTGCAGAAACTGCATCGTGCACTGTGATATTAAACCGGAGAACATACTTCTAGATGCTTCTTTTGTGCCCAAAATAGCAGATTTTGGATTGGCTAAGCTCGTAGGACGTGATTTCAGTAGGGTTTTGACTACGATGAGAGGAACCATAGGTTACCTAGCTCCAGAATGGATATCCGGGGTGGCGATAACAGCAAAAGCTGATGTGTACAGTTACGGAATGGTGCTTTTTGAGCTAATCTCGGGTAAGAGAAATTCGCAAAAATTGCAAGGACAGGAAATGAACTATTTTCCTTCACTAGCAGCAAGTAAAATGAAGGAAGGAAATGTAATGAGTTTGTTAGATTGGAAACTAAAAAGAGAAGAAACTTCAGAAGAGGAGGTTGTTAGAGTTTGTAAAGTTGCATGCTGGTGTATACAAGACGAAGAAGACTGCAGACCTTCGATGAGGCAAGTGATTCAAATGTTAAAGGGTGTTATAGAAGTTAGCATGCCGCCCATTCCCAGAATGTTGCAGATTCTAGCTGAGAATCCTGAAAGCGTTGATTTCTATTCTAATTTTTTGTTGAGTGCTACTAGTAGCAACCACAAAAGTTTGAAGGTCAAAAGTTTTTCTACAAGTTCAAGAGATTTGTGA

Protein

Gene

>g376837.t1
ATGGCGCTTGCAGGCACCAGTCTGCTGAAAAGCTATCTCTTCTTCCTTTTCTTCAACATCGCCTACGCGTCAAAAGACTCTATTACCCTTGACCAATCCATTAATGGATTTCAGAAGCTCACCTCCAAAGGTGGTAAATTTGAACTAGGGTTTTTCATACCAGGAAATTCTCCATACTACTATCTCGGAATTTGGTACGGTCTTAAGTACATACCTGAACAAACTGTAGTGTGGGTTGCCCACAGAGAAACTCCCTTAGCTGAAATTTCCCAAACAACCCTTGCAATCTCCGAAAATGGAAATTTAGTTCTTGCCAACCAGACAGACCCTATGATCTGGTCCACAAACATTACCCATAATACCCCTACTGTTGTAGCAGCTGTTCTTCTTGATACTGGTAATTTTGTATTGAGAGACGCATCAAATCCTAATGTAACTTTATGGCAGAGTTTTGATCATCCTGCTCACGTTTGGCTACCTGGCAGCAAAATCGGTCTAAACAAAGTAACCAAACAGCTACAAAGGTTAACCTCCTGGAGAAATGAAGATGATCCATCCCCTGGAATTTTCAACCTTGAAATCGATCTCAATGGCACAAGTCAACTCTTCTTAATTTGGAACAACTCCCTCACCTTCTGGAGAAGTGGCACATGGAACGGTCAGGCTTTCAATCTGACCCCTGAATTTACCCCAGAATACATCTACGACTTCGATTACATTTGCAATGATAAAGAGAATTACGTAACGTACACCATATATCACGACTACACAGTCTCATCTATGATCGTCATGGGCATATCCGGTCAGATCAAGCAATTGACTTGGGTGCCAAATAACGGCTGGTTAACTTTCTGGGCCCAAATCCGCCGACAGTGCGATGTACATGCTTTATGTGGTCCATTCGGTGTCTGCAACGAGGTTGATTTACCATTTTGTAATTGTATCAGGGGGTTCAGTGAAAATTCTCGATCAGATTGGGCTTGGGGATATTGGGCTGGAGGCTGTGTTAGAAATACAAAACTGGAGTGCGAAAGCACTGGCAAGGGTGAAAAAGATCAGTACTACATGATGCCCAACACTAGAATGCCAGGTAATCCGATAAGTGCACGAGCTGCAAGTGCTTCTGATTGTGAGTTGAACTGCTTGAACGACTGTTCATGTACAGCGTACAGTTACAACTCTTCCAGTTGTTCTGTTTGGCATGGCGGTTTGCTCAATCTTCAAGAGAAGTACAATGGTCCTAATGGAGGCACTCTCTTTGTTCGCCTTGCTGCTTCCGAACCTCCGGTTGTAAACAAAAGCAAAGCGATTATAATCCCTTATGTGGTAAGCTCTACACTTGCTTTCTTGATATTTCTCATTGCTGCATGGTTGATATGTTGCTGTATGAAGAGAAGTTCACGGAAATCAAACATTACAGAAGGGGGTTTGACAGTATTTCGATACAGCGAACTGCGAAGCGCAACTAGAAATTTCTCAGATAAATTAGGAGGAGGAGGATTCGGTTCGGTTTTCAAAGGAATTCTACCCGACTCTTCGTCGATAGCCGTGAAGCAACTAGAAGGAGCGAAGCAAGGAGAAAAGCAGTTCAGAACAGAAGTGAGCACGGTCGGAATAATTCAACACCTGAATCTTGTTCGACTTCGGGGATTCTGCTCCGAAGGACTGCACAAGATGTTGGTGTACGAGTACATGCCAAATGGTTCTCTAGACAAAATACTGTTCAATGACATGAGTTTAGATTGAAAAACAAGGTACCAAATAGCACTTGGAACTGCACATGCTCTAACATATTTGCATGAGCATTGCAGAAACTGCATCGTGCACTGTGATATTAAACCGGAGAACATACTTCTAGATGCTTCTTTTGTGCCCAAAATAGCAGATTTTGGATTGGCTAAGCTCGTAGGACGTGATTTCAGTAGGGTTTTGACTACGATGAGAGGAACCATAGGTTACCTAGCTCCAGAATGGATATCCGGGGTGGCGATAACAGCAAAAGCTGATGTGTACAGTTACGGAATGGTGCTTTTTGAGCTAATCTCGGGTAAGAGAAATTCGCAAAAATTGCAAGGACAGGAAATGAACTATTTTCCTTCACTAGCAGCAAGTAAAATGAAGGAAGGAAATGTAATGAGTTTGTTAGATTGGAAACTAAAAAGAGAAGAAACTTCAGAAGAGGAGGTTGTTAGAGTTTGTAAAGTTGCATGCTGGTGTATACAAGACGAAGAAGACTGCAGACCTTCGATGAGGCAAGTGATTCAAATGTTAAAGGGTGTTATAGAAGTTAGCATGCCGCCCATTCCCAGAATGTTGCAGATTCTAGCTGAGAATCCTGAAAGCGTTGATTTCTATTCTAATTTTTTGTTGAGTGCTACTAGTAGCAACCACAAAAGTTTGAAGGTCAAAAGTTTTTCTACAAGTTCAAGAGATTTGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020258340.1	3.0e-288	uncharacterized protein LOC109834727
Swissprot	O64477.1	5.0e-208	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
trEMBL	A0A6P5FFS0	7.6e-254	uncharacterized protein LOC109714840

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G19130.1	50.06	0.0	758		S-locus lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g376837	AT2G19130.1	801	354	18	9	775	7	795	50.06	0.0	758
g376837	AT4G00340.1	800	397	22	34	786	27	795	40.62	1e-144	510
g376837	AT4G11900.1	833	444	25	13	764	16	826	34.33	4e-123	439

Ortholog group

Species	Genes
Allium cepa	g114879.t1; g223625.t1; g231660.t1; g28667.t1; g34639.t1; g376837.t1; g392474.t1; g392992.t1; g393005.t1; g450089.t1; g90119.t1
Allium fistulosum	AfisC2G09348; AfisC3G04139; AfisC3G04861; AfisC3G04880; AfisC3G04884; AfisC3G04886; AfisC3G04888; AfisC3G04889; AfisC3G04892; AfisC3G04893; AfisC3G04925; AfisC3G04926; AfisC3G05189; AfisC3G05552; AfisC3G05554; AfisC3G08934
Allium sativum	Asa0G03374.1; Asa0G05382.1; Asa2G03945.1; Asa2G03965.1; Asa2G03967.1; Asa2G04010.1; Asa2G04092.1; Asa2G04103.1; Asa2G07458.1; Asa6G00461.1; Asa7G06596.1
Arabidopsis thaliana	AT2G19130.1
Oryza sativa	LOC_Os01g06240.1; LOC_Os01g12290.1; LOC_Os01g40499.1; LOC_Os01g40499.2; LOC_Os01g45520.1; LOC_Os01g65010.1; LOC_Os01g65030.1; LOC_Os01g65060.1; LOC_Os01g66610.1; LOC_Os01g66640.1; LOC_Os01g66680.1; LOC_Os04g34250.1; LOC_Os04g34270.1; LOC_Os04g34290.1; LOC_Os04g34320.1; LOC_Os04g34330.1; LOC_Os04g34370.1; LOC_Os04g34390.1; LOC_Os04g34410.1; LOC_Os04g34420.1; LOC_Os04g42740.1; LOC_Os05g07300.1; LOC_Os05g07300.2; LOC_Os07g36780.1; LOC_Os10g20120.1; LOC_Os10g20160.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	74	181	114.0	2.8e-33
PF00954.17	S_locus_glycop	Domain	213	321	88.4	3.9e-25
PF08276.8	PAN_2	Domain	348	406	51.6	6.6e-14
PF00069.22	Pkinase	Domain	493	744	154.9	2.2e-45

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network