result

Gene information

Detail information of g377188

Location

Gene	Chr	Start	End	Strand
g377188	CHR1	118460460	118469104	+

Sequences

CDS

Protein

Gene

>g377188.t1
ATGGAAGAATCAAGTGCCCGTCATAGAACAGGTTACATTGCTGATGTTTTAAAACGAAAAAAGGAAGGGAACTCTACCCCTAGGTCACCATTAATTTTCAGAATTAAACGATCCAAATTGACGGCTTCTCGCAGAAATAGAAGCTTCATCAAACAAGAAAAAGGCGATAATTCTAATGAGGTAACTTTATTAGGCTATATACTTCAATAGTGTAATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTATATGTATGTGTGTGTGTGTGTGTGTGTGTGTCTGTATGTATTTGTGTGTGTATGTGTGTGTGTGTATGATTGCTTGTAATACATACTAGCTTTGAAGGTTCAATATGTGTACTAGTTCTACTTACTGACATGGTAATCCTGCTTAAAATTTAAACTGTTACTTCTGCTTATTTTACACTACAGCTTATGTAGCCAATTTAACGACGAACAACAAATACTGTATTATGATCTTCTTGATGTAAGTTTTTGAAGTGCATAAAGATTCAATCAATATTAGCTGGTACTATTAATTTGTTACATCAAAGCTATTGTAACCTTTCCAAGTTTATGACCTTATAACACCCTAATATATGGTTGTAGAGCATTAACACAGGCTTGTGATCCCAAAACAACAAGCACATTTTCGTTTCTAAAACTTTATGATCAACTTTTTTGATCCCAAAATTGTTATCACCACTATGACTCAAGTATCATTTCCTGAGCAGTTTTGTTATTCACAAACGAAATTAATCTATTTTACAACATTAGGAGTTGGAAGGGGTTCAGATGAAAAATACATGCATTGGTGAAACCTCTCAGACAGATGGTAGGTGTGATTTGTGTGTCAAATGCAAGAAGCCTGGATTGCTCATGTGAGTGCCTCGTTAATTTATTACTAATAACTACTTTGCATAGTGAATATTAACATTATACTTCAACTTCTGGCTGTACCATGATTTATGATTTGATGTTTTATTTGAGAGGGTGCAACCATGTGTATCTGTTTGGTTCACATTGTTCGCAGATGACTTCTAATCCACTAGAATAAACTGCGTTTGTAAGCATTTATAAATTTGATAACTAGTTATGTTTGAACAATTTATATCTATATTTAAAGCAAAGACAAAAAAGCAAAGCAAGCCATATTACAGGGGGTATTGTTGTTTTGTTTTTTTGACCATCCATGTTTGTTCCTCTCTTTGGATGTTTTATTTATGACAAGTTATTTAAAAGTTGGTGCAAATAGCCGATTATGGGATTAATTAATTGTTTCTGTGCTTGATTTTGTTCTAGACTAGTAATGTGATATCTATGCATATCCATCATTCAAGGGGAGGAGCATAGCATGAATTCCTATATTTTATAATATGAAATAAATAACCTTAACAAATGCACAGGGTAATTAATATCATGGCAATAAACATCTGGCAGCATAATAATATTACTCTTTTATAGTAATTTTGTAAATAAAATATTTGCACACTGTAAAAAAGGAATGGGATGGCCAAAGCTGTTAACTGAACTCATTACAGCTGTTTTCATTTGTACACCACCGAAGCATTTATGTAGGTTTAGTTTCTTGATATGTATTTATGGAAGTATCTTTTATATTCAGTGGAATATTTCAACTTTGTATACTGAATCTGAATTTTCATATCTATTGCATGTGGCAACTGATGATAAGTGCTTTTAGGATTTCAAAAAACACTTTCTAAGATGAGACTTGCTATAAAGATTTCTACCAGTCTTATGTTATCATATACTTTGGAAAATAATGAATCAGCATAAACTTATTATATATATGAAAGAAACTCAAATATGAACAGGTATTGTGACGGCAAGAACTGTAAGAGATGTTATCATCTATCTTGTATAGATCCTCAATTGAGTGACATTCCTTTTGGAATGTGGTACTGTGTTTACTGTTTATGGAAGAAACTGGAGTCTGGAGTACATTCAGTATCCCAAGGCATTGAATCGATTTTGGATTCTAAAACTGGTATGTACTTTACATACAACTACTTTGGTAGTTTAGAATTTATTTTTATTACCACATTGTTTTTTTCCCATTGTGTCTTTAGAAGTGCGGAAAGGGAAGCATTATCTTGTGAAGTATAAAGGTCTTGCACATATTCATAATCGTTGGATTCCTGAAATCAAGCTGCTTAGAAAGGCTCGTTCACTCCTAGAGAAATTCAACACGAAACAAGAAAGGGGACAGGTTACCATCATATGTCATAATTCAGGATTTTTCATCTTTTACCCTTTTAAGAATCACGCGTAGTTAATGGACAAACAAAATATTGTGAAATTTTGCTCTTATAGTTTTTAATTATATTAAACAAATAATATTTTGGAAAGGTTAATACTGGTAAATACTAAATATCATTATTTTGGAGTGCTGCGGGGGTAAATTGGAAGCAAATTAATGGTTTGAGTTACCAAACAACTAATTTCCTGTTATATAAGCAAAAGCATATGGACATCAGCATTCCAACAGTTTAACTATTATTTTCTTTTGCAATCTATAATTTTATGCATTTATCTCATGAGTTTACTACTTTCTCAAATTTTATAAGATTGAATGGAAACATGAATGGACAACGCCACATCGTTTATTACAACGAAGAACCTTGGTGCTACCCGAACGAATTGATCTTTGTTCTTCCGAACATGGCGATAGCAGTAAATATAGCTACGTTGAGTGGCTTGTTAAATGGAAAGGACTTGGGTATGAGTATTCTACCTGGGAGTTTGAAAATTCAGAATGTTTGTGCTCAGCTGATGGGAAAGCTTTGATGGATGAGTTCAAGAGGCGACGGATTGAAGCGAGAAAGAAACCAGTTCCTTCTCAAACTATCAAAGTATTCTTTTTATTTTAGATTTGCATTTTTGGCATGCATATACGATTCAAACATTTATCACTTTGGTTGTAGTTCCTTGCCTTTCATATTAATCGCATTATCACATTACCGAAAACAATGCTTGTAGCAGTGATCACTCATCTAGAAGTGCAACAAACTAATTGGTTGAATTTAGATTTGGTGTCACATATGAATGCTTGGAAATGCCCTTCCTTTTTCTTGAATTCTAAACCAATTTTTAACTCTCCTCCAAATAAATATTTACTTTCACGTTAACCCTAATTTTTATATTTCTGTAAGCTAAGTCATTATATTACAACATAATAACTTTGCTAAAAAAAATTCTTGCTGATCATGGTACTGTAAAATGCACAAAATAATCATAATATCCATTTAATATTCCCTCAATAACTAACCTCTAGCGTTATTATTATTTAGCTCATAATCAATATTTCTGTTTTTTTCATAAAGATAACTAAAATAGATAAATTAAGTTTCACATATGTCAAGATACCTGCAGAAAAAATAGCTGCTGATGCTGATGTGTATAAGATGAGAATATCAATAAAATAACGATTTACTGCTTATTTTTTTATGCACATATGCTTAAATGATATGTTCAAAGGTTACTTTATGCAATTACATTATGCTTAGCATCAAGTCAATTTATTAGTATTTTCAATAATTACTTGGTCTTTGTAGCTTTTTCTGCTTACAAGATGTTTGATAATGATATTGCCTTCTCTTAAATTCATTTTTAATATCCTTTAATGCATTGAATATCCTATCTTAATTCGGGGCTTCAAGCACTGTTCTCCTATTATTATCAATTTCAGGATTTATGCATAAGAGAAAATCTCCACAAGAAGCTCACAATGTTAGCGGATGAGCTTCCAATTGAACATAACAAAGAGTTCCTGTCCTCAGTTTGCAATATCATCAAGCATTGGTACAAAAAAAAGACTATTATTTTGATTCTTGATCTGGTAGGTTATCAGTTGCAATGCATATCCTCCTTGTAATTATGCATGTTCATCTTGAAATCTAGATAATATTTTTGTATGTCATTAATGATGCAAGGCTTTTTGGTTTTCTTCGGACTAACACTTAATGCATTCTTATATCTGGCAGGAGGCAAAGGTTAAATCCATCGTATTCTTTTCATACCTGCTCTCTTATAATTGTCATCCTTTCCTTATTATTTCTACCATTCCTTCTCTTTCAAACTGGGAAGCTGAGTTTGCTCGTCTGGCACCATCCATAAACATTGTTGTTTACAGTGGAAATAAAAAAGCTCGTGAAATGATAAGGTCCCTCGAATTTTATGAAGAGGGAGGCTGTGTTATGTTTGAGGTCCTCATAACATCCCCTGATGTAATCGTCGAGGTAACTATGGGTACACTTGATTTTGTATGCATTTTCCTATTTTGTGATTTGTTCTATTCTGGATTTATCTGTGAATTACTTATTGAAACGTTCACAAAATCCCGGGCACTGATTTAACTATCATTTAGTACATTTGCTATTTCAATTGTAAGGTTTTAATTTTTGATAAAGTGAAGAATCATGAGGAACTCACCATTAAGGTTCAATTATTTGGTCTCATTCAAAACTTATAACAAAAATGGACTTTTTTTTGGCTTTTATACAAGCAGACTTTCAGAATGTGAACGTACATACTCAAAATCTGTGTAATGCGAATATATAAAAATCAGAAGCAAAGACTATTTTTGTAAATAAGATTTAGACAAGGCTTATTTGTGAAATAAGTTGAGTGTTGATTCTTAGTTTTGTAATTTACTCTAAAAAGAAGAAAAGGGAAATGATAAAGAGAGACATATGATTTGTACATTGATTGGAATTCCAAAAGAGGTTTATTGGATGCTTTAATTTGATTGCAAGCTCTCTATTCCTATTGGATGTTAATTTTTTTTCCTCCTTGCAGTCTTATACTCTTGTTCCTTTAGGTGGATAAATGTGTGTTTGTAGCCCGTCTACTCAGTAGTTTATAAAATTCTTAGTCGTTCCTTTGCAATTAATTGGTTCCTTTTAATATTCCTAAGTCCATAACAGATTTTTGCCTAATACATTTTATTTAAAATTATTACTTTGTTTTCAATATATTGCTCAACAGGACCTTCAATATTTGGATTGTCTTGTCTGGGAGGGAATAACTATAGATGACTATCAGAAAAAAGAAATTTCTGAACAGTTGGACAAGTTTGCAATTCTCTCGGAATTCAAACTCCTAATTTCGAATGGTGAACCTAAGGTAGATTTGCTACTATTCCCTCGGCAATAATGTTGCTGATCATTCCATTTTCTCAAGAAACAATTGTTAATTACTATATATTGCTTTCATTTTCGACATAAAGGGACAAACAAGTACTCAAGATTCAAATTCCGACTCAAGTGAAAATGGCAACGAACTTTCATTTAGTTTCAAAAACTCATTTATTTCTCTTATAATGTAGGTTGTAAGGCTCATCAAGAACATATTTTGTTCTTGAGGAACCTAATTAGTTTATACGTGCCAAACTTATTTTTTCCGTTCATATAACTTCAAGTATAAAACTAATTTTACTGATAAAAAAAAGTTAGGACATTATCTGTTAGTGTATGGGGCATGAGAATTAAGGGACATGGATCATTACATGAATTTAACTGACAACTATGACTAATAACTTAAGTCAAAAAGTCAAATTCTTCCTTCATGAATTCATGCATATTCTGCTATTACTTCTTAAGTATCATCAGTTGAGCTCTAAAGACTGATATTAATAACATTGCTATATATATTTACAGAGAACTGGACCTGCTCTCAAAGATTGTAATTTCTCACAAAGCGCATATGCACATGGAGCACAAGAACATGATGTGCTTCTATGTGAAGAAAACCCTAAGGCAGACCAAGTTTATTCTGACATGAAAGCTGCACGTAATAGTCAAGAAGTGTTTGATCCCACCCCTCTTCAGAATCAGATGACTATGATGAGCCCATCGGAACATTTAATTGCTCATTTTCATGAAAAAAGGGTGACTATCTTCTTGCTTGCCATTTTTATATTGTATACTAGCTACAGTGAAATGTTCATTTCTAAATTTTGGCATCAAAAAATTCTGTAAATTCTGTCTTTTGATATACACTTTTGACCTTCTCTAAAAATTACCTAAATTAATGTTTCACTCATTTTCCTATTTTCTCAATTTGCCTTGTTTTCACCGTGTGAGCACGCGTGTACGTGTACACACACTTGCAAATTAGACTTGAGACCATTTCTCAGTCAAGTTAAGAATAACTGCAAAATAATGATACAGTTTTGTTTTATGTAGTAGAGATATGTTTGTAGTTTATCTAAGTATTTGTTGTCCTAACTCCTAACCATGTCTATGCAATATGATAGCATTTTGTTATTGTTGCAGAAGTCGACTTTAGCTGCAGAATGCGAGAAAGAGCTGGAGGAGGTGCGGAAAAAATACAATCACCTCCTTCTGAATGAAGAGCAAGCGTGCAATCAAAACTTAAAGCTAGTAAAGGAATTACAGTCCACCAGTGAGAAAAATAAATTTTTGGCAGAGTTGCTGAAGAGCCATTCCATCGAGCCTTGTAAGCATGGAAGCTCAGAAGAGTTTCGAGGTATGATGTCTTTAATATACCCATGAATGATAAAAATGGTAACCAATATAGCTGCATGATTTGTTGCAAAAAAATTGGGTGCATGTACCCAGACACACTGTTATTGAACTTGAGTCTCTTTTGACTTTTAAATTGGCAGCCTAGTGTGAAAGATTGATAGTACTCAACAACTCTAATTATTGACATTAATAAGTATAATCTCTGCTTTCAAGTATCTTATTCTACATTTTCTCTATTGCACTTTGACACTTAATGACAGCACTGTTTCTGCATCGGAGAATGTAAAGTAAGAGTATAATTTAGTGTAACTTGGTATGTCCAATACTCTATCAGCACGTAAATTTTGTTACAAATTTTTTGTGAAAGACATTATTATGCATGCTTCTCATTACATTTCAATCATCCTTGACATCAAACACTGCTTTTCAGGTCAAATGGGAAACTTGAAGCAGATGTTGCCAAAGAAAGATATTTCCAAAATGCCAACCTTGCCCTCGTCTTCAAGTTCAGCTCTACCATTTCCTTTTCCATCGCCAGGGAAGGGGCCACCGTCCACTGTTGTAACTTCACTTTCTGTGCCCCCTGCCTGCATGCAACAATCAAACAACGCCTCACAAAGGAATTTAACATCTAAACCTATGTTGCCTTCTTCTGCAGGTAACTTTTAGAGATAGATTTTTCATTATGCTATACACATTTCGCCATTGAACTGTTCATTGTCATTGAAACATGTGGTTCATTATTTACTTTTTATTTGATGGCAATCGAATCAATTTACAATGGTTCATTGTCCGTTTGAACATTCACCAATTGATATATGCCTTTCATCATTTGGTTTTACCCTTTTTTGCATTGATAATATATATCATTTTTGGTTGCCAACTTTGCATATATAAATACCTGTTTATGGATATGAAACACTGGACTATTCAAAGGAAAAGCTATAATCGTCTTTTTATCGATAGTGGCCCATTTCTTTGGTTGGGTTATCAGTTTGTTTTCCTTTATAAGCCAAGATGGTTCATTAAGATCACTGAGATACAACTAGTCGTTTTGGCATTTTTGTTATTTCTTCTGTTCCACCTCTTCATAGCTGTATTTTCCATCTATGATTTTCTTAGAAAAAAATATCACATAGAACCCTAATCACTGCACCATTATATTAAGAAGAAAATAGAAATGCAATAATAAAACATACATGGTGATTTCCTTTTAACAATTTTCTTATGCTACATTTCAATAATCCTTTATTCAAAAGCAAAATTTATCATTCGGATCTGCTTCAGTGTTTTTTTTTTTTTTTTCCTTTTTTGTTCTGATGTGATTTGGTGTTCATTCAACAAGTGCTACTGAGTTAATAGCTTTATATTCAAATAATATTGATTTTTCATGTTATCAAGTTGAACAATGTGCATTCTTTAAGCTGAGTTTTGTTATTGCAGTTGAATAATATTGCTTTATGCTAACCAATTTTTTCTTCTTCTTTAGGTGATCAGAAAAAATCTGTAGAAGAGAATTCAGTTCTTCATGCTTCTGTGCCGCATGTTCGCCATTATCATACACGGAAACACGACATGATTTAGCATAAAAAATAATAGTGCATTATTAAGTAAACCACGTACTAAATTAGTCTTGTATGTTGCATGTGATTATTGTTGTTGTTGTTTTAGTTTGAGTACATTTATTGTGATTCTTCCAGTGCAAATGCGTGTATAGGAAGAAAAATATATGCGTTGGATAGAGTTTATGGATGGAATTCACGAAATGCATTTAAGTCATTTGATTTGCAATTCAATAGTATGATGAATTATACTAAATTGCCATTACCATATTAAATAGTATGATTTGCAATTGGCTAACACAGATAATAACCCTATCGGTATGACCTTCCCGACTTGATGGTTATGTTTGTGTCATGAATAAGTGACACAAGAATCACTTGGGGTTTCCCAGGAGTCAAACAAGTGAGGATACTGAGCTGATTCTAGGTCAGGTAAGTTCTTTGCTCAGGGCAATCCCTCAGTGACTGCACCAGATTCGAAGCTTGCTTCAGATCGAGCTTCCTTCCATACATCCATTTTATCCAAAGAAATATTGGGTCAGCTAACTCATATGGAGCTATGCTTAGGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_017701402.1	1.8e-75	uncharacterized protein LOC103719900 isoform X2
Swissprot	F4JTF6.1	1.1e-16	Protein PICKLE RELATED 2
trEMBL	A0A8B7MWE1	1.3e-75	uncharacterized protein LOC103719900 isoform X3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G25170.1	25.16	7e-19	92.8	CHD3;CHR6;CKH2;EPP1;GYM;PKL;SSL2	chromatin remodeling factor CHD3 (PICKLE)

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g377188	AT2G25170.1	314	141	7	87	325	129	423	25.16	7e-19	92.8
g377188	AT4G31900.1	299	144	9	87	325	77	357	25.75	9e-18	89.0
g377188	AT5G44800.1	317	162	8	89	344	553	848	23.03	1e-15	82.0

Ortholog group

Species	Genes
Allium cepa	g297461.t1; g349208.t1; g349209.t1; g377188.t1
Allium fistulosum	AfisC1G04777; AfisC1G04778; AfisC1G04779; AfisC1G04796; AfisC1G05133; AfisC1G05141; AfisC1G05142; AfisC1G05143; AfisC1G05144; AfisC1G05145; AfisC3G08571
Allium sativum	Asa2G07113.1; Asa2G07114.1; Asa4G03727.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g02050.1; LOC_Os06g01320.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00385.21	Chromo	Domain	73	122	31.3	1.2e-07

Gene Ontology

Accession	Ontology	Name
GO:0051276	P	chromosome organization
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006325	P	chromatin organization
GO:0006342	P	chromatin silencing
GO:0006344	P	maintenance of chromatin silencing
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006996	P	organelle organization
GO:0046983	F	protein dimerization activity
GO:0008150	P	biological_process
GO:0042802	F	identical protein binding
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010629	P	negative regulation of gene expression
GO:0016043	P	cellular component organization
GO:0016458	P	gene silencing
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0040029	P	regulation of gene expression, epigenetic
GO:0042803	F	protein homodimerization activity
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045814	P	negative regulation of gene expression, epigenetic
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11642	CHD3, MI2A; chromodomain-helicase-DNA-binding protein 3	EC:3.6.4.12	-	-
K11643	CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4	EC:3.6.4.12	-	-
K20091	CHD2; chromodomain-helicase-DNA-binding protein 2	EC:3.6.4.12	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network