result

Gene information

Detail information of g378978

Location

Gene	Chr	Start	End	Strand
g378978	Scaffold_74189:HRSCAF_457275	596	3091	-

Sequences

CDS

>g378978.t1
ATGTCGAGTTCTAGTTTAGTCTTAGCGGAAGCAGCGGAAGACCTGCACCACACTTACAATCGGAAACAGAAATCGCTCGGGCTTCTCTGTTCCAAATTTGTTGAAATATACAATAGAGAAGACGTAGTATCAGTTGGTGTGGATGAGGCAGCAAAGAATCTAGGTGTAGAGAGGAGGAGGATCTATGATATTGTTAATGTTTTGGAAAGTATTGGTGTTTTAGCAAGAAAGGCCAAGAATCAATACACTTGGATTGGCTTTTCTGGAATTCCTAGAGCCTTAGAAAATATCAAGGAAAGGGCGCTAAAGGAAACACCTTCTATGCCTGGAAATATTGTGGAAGATGTATCTTCCCCGTATACCAGATCTTCTCAAGAGGATCATGAGGAAAAAGAAGAGCACGAAAGATCACTAGATCAGAGTAAAAATTATGGGGAGGAGAGGTGCAGTTCTTTATCCCTCTTTTCATATAGAATTGCACGTAGGCGAGAGAAATCACTTGCAATGCTAACAGAAAATTTTGTGAAGTTATTCCTGACCAAAGATGTGGATGCAGTAACACTCGATGAAGCTGCAAAATTGCTGATAGGTGGCCATCACGAATCTTCTCAAACAAAAACTAAGGTTCGAAGACTGTATGATATAGCAAATGTGCTATCTTCACTCAATCTAATCGAGAAGACACATAATGCAGATACAAGAAAGCCAGCATTTCGCTGGCTAGGATTAAACGGGAGACAAATCCAATGTAAAGTCACCGTTGCATTAGCATCTGTTGTGAACAACACCAACAATAGGAACGACAATAACACTGATGCTAATGCTAATAATAAAAGGTTGTTTGGAACGGATATTAGTAACATAGACTTGAGCAAAAAGAAAAGATCAGTAGCTACAGCCAATAAGAAATCAGTGCAAACACAAACAAACATAGAAGAAGTGAAGACCTGCAATCTCATCGCTCACAAACAACTACAAACTAAAAGATATTGTTTTGGGCCTTTTACTCCTCTTGTAGCACCAAAGAGGGGGGAAATTTGTGAACAGAAAAGAGTAAGGGTGTCACATATTAATGTTTTTGAAGATTTGCCAACTGATTTTTTCCCCGATTACCGCAATCAAGGTTTGTTCAATGCCTTTAATTTATGA

Protein

Gene

>g378978.t1
ATGTCGAGTTCTAGTTTAGTCTTAGCGGAAGCAGCGGAAGACCTGCACCACACTTACAATCGGAAACAGAAATCGCTCGGGCTTCTCTGTTCCAAGTAAGGTTTTGTTCTTCCAAAACAGATCTGATTTTTTCGGGTTTTTCCCTTTTAGTCCGAAATTTTCAGATATTTTCTTTTAATTAAATTGTTATTTATTTCAATGCTGCAGATTTGTTGAAATATACAATAGAGAAGACGTAGTATCAGTTGGTGTGGATGAGGCAGCAAAGAATCTAGGTGTAGAGAGGAGGAGGATCTATGATATTGTTAATGTTTTGGAAAGTATTGGTGTAAGTCTTTTTTTTCCTTTGGGATTTGTAATTTGTTTTGGTGTTCAAAGGTTTTTATGTTGTGTGGTTTGTATATAAGGTTTTAGCAAGAAAGGCCAAGAATCAATACACTTGGATTGGCTTTTCTGGAATTCCTAGAGCCTTAGAAAATATCAAGGTATGCTTTAGTAAAAATTAGATTTAGCAAAATTACAATGCAGCCTATTTGCAATCCTTCATTTTGAATTATGTTTCAAAATTTCATTTTTTCGAGTTTAACAAATAACTAGTTTCAGAATTGTAGGGATAAGCTGAGATATTTGTAAAACTTTGTGGGTTCATTAGTAATTTTAGTTTTCTGCTTTAATTATTGCCTGGTCACTTGAACTGAAATAGGAAAGGGCGCTAAAGGAAACACCTTCTATGCCTGGAAATATTGTGGAAGATGTATCTTCCCCGTATACCAGATCTTCTCAAGAGGTATTTCTGCTCCTTCTTTAGTTTGATTTCTAAGTTGAAGATGCAATAGATTATGGAGGTTTGTCTTACATTAACGAAGGATCATGAGGAAAAAGAAGAGCACGAAAGATCACTAGATCAGAGTAAAAATTATGGGGAGGAGAGGTGCAGTTCTTTATCCCTCTTTTCATATAGAATTGGTAATGTTATCAAACCACCATTTGATTGAATTTATTTTAGTTCATTTAACGTTCTACTTTCTTATCTGTGGTGCAAACGAGATTTTGTTTCTATATACAGCACGTAGGCGAGAGAAATCACTTGCAATGCTAACAGAAAATTTTGTGAAGTTATTCCTGACCAAAGATGTAATTTCTTATATTCTTTTTGTTATACATTCTTAATTGATTCTCTAAGATACTATTCTCTATGATTTCCAATTACATCGAAGTCACATTTTCATTCTCTGGACTGATATAGACAGTAGAGATGTGTGGCATTAGGATGATGTGTGTGTCGCTGTACGTATATATACACATACACACAAATATATGTGTGTGTGTGTGTCTGTGTGTGTTTATAAGAGGATTTTTCATCCTATATACATTTCACATGGATATGTTCACATGATAGCCTATTTCCTACTAAAAAATATGTATTCTGGTTTAAATTTAGTTTTAGTTTCTATTTTTTTTCCTGCTATTTTATTACATTACCATAGTTGGATATTGATGCATATATTGCATACTTAGTTGGCAATATTAATGTCCCTTCATATTTGCAATCTTTGCTCATCCTGCCTTTAGCCTCAGTTTCACAGTCTCATGCAAATATCCTCACTTATCTCTTTGCCTTTACAATGTGTAATCCCTGTGCATGGTTTATATGGTATAAGTAAAAAAAATTCCTTCCTTGTTATCTTGTTACTGAATATATATTGCAAACAACAAATAGGTGGATGCAGTAACACTCGATGAAGCTGCAAAATTGCTGATAGGTGGCCATCACGAATCTTCTCAAACAAAAAGTGCTGCTATAAGTGCATCATATCTATTTTCATCATTATATTTCAATTTTTCTAAAGCAGCCTTTTTCTAAGCTGAAAAATTACTATGCAGCTAAGGTTCGAAGACTGTATGATATAGCAAATGTGCTATCTTCACTCAATCTAATCGAGAAGGTACATTAAGGCTGCTTGAAATATCGTTTTCCTGTGAACTAGTTTACTTGATGATTATGTAACTATTTTTTATACTTTGCAGACACATAATGCAGATACAAGAAAGCCAGCATTTCGCTGGCTAGGATTAAACGGGAGACAAATCCAATGTAAAGTCACCGTTGCATTAGCATCTGTTGTGAACAACACCAACAATAGGAACGACAATAACACTGATGCTAATGCTAATAATAAAAGGTTGTTTGGAACGGATATTAGTAACATAGACTTGAGCAAAAAGAAAAGATCAGTAGCTACAGCCAATAAGAAATCAGTGCAAACACAAACAAACATAGAAGAAGTGAAGACCTGCAATCTCATCGCTCACAAACAACTACAAACTAAAAGATATTGTTTTGGGCCTTTTACTCCTCTTGTAGCACCAAAGAGGGGGGAAATTTGTGAACAGAAAAGAGTAAGGGTGTCACATATTAATGTTTTTGAAGATTTGCCAACTGATTTTTTCCCCGATTACCGCAATCAAGGTTTGTTCAATGCCTTTAATTTATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244212.1	8.8e-89	E2F transcription factor-like E2FE
Swissprot	Q8LSZ4.1	5.0e-65	E2F-like repressor E2L3
trEMBL	A0A6I9QPZ8	1.4e-83	E2F transcription factor-like E2FE isoform X4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G48160.1	43.30	6e-73	271	DEL1;E2FE;E2L3	DP-E2F-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g378978	AT3G48160.1	388	165	9	12	380	25	376	43.30	6e-73	271
g378978	AT3G48160.2	389	166	9	12	381	25	377	43.19	6e-72	268
g378978	AT3G01330.1	383	184	10	3	380	2	339	38.90	8e-64	241

Ortholog group

Species	Genes
Allium cepa	g114312.t1; g337833.t1; g378978.t1
Allium fistulosum	AfisC2G02146; AfisC2G02747; AfisC2G07405; AfisC2G07415
Allium sativum	Asa5G01918.1; Asa5G02010.1
Arabidopsis thaliana	AT3G01330.1; AT3G48160.1; AT3G48160.2; AT5G14960.1
Oryza sativa	LOC_Os02g50630.1; LOC_Os06g13670.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02319.17	E2F_TDP	Domain	22	86	75.9	1.7e-21
PF02319.17	E2F_TDP	Domain	164	242	70.7	6.9e-20

Gene Ontology

Accession	Ontology	Name
GO:0006260	P	DNA replication
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0051726	P	regulation of cell cycle
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006259	P	DNA metabolic process
GO:0006261	P	DNA-dependent DNA replication
GO:0006275	P	regulation of DNA replication
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007049	P	cell cycle
GO:0008150	P	biological_process
GO:0008156	P	negative regulation of DNA replication
GO:0009058	P	biosynthetic process
GO:0009059	P	macromolecule biosynthetic process
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010564	P	regulation of cell cycle process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010948	P	negative regulation of cell cycle process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022402	P	cell cycle process
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0032875	P	regulation of DNA endoreduplication
GO:0032876	P	negative regulation of DNA endoreduplication
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0042023	P	DNA endoreduplication
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0044786	P	cell cycle DNA replication
GO:0045786	P	negative regulation of cell cycle
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0046483	P	heterocycle metabolic process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051052	P	regulation of DNA metabolic process
GO:0051053	P	negative regulation of DNA metabolic process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:0090304	P	nucleic acid metabolic process
GO:0090329	P	regulation of DNA-dependent DNA replication
GO:0097159	F	organic cyclic compound binding
GO:1901360	P	organic cyclic compound metabolic process
GO:1901363	F	heterocyclic compound binding
GO:1901576	P	organic substance biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000104	P	negative regulation of DNA-dependent DNA replication
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09391	E2F7_8; transcription factor E2F7/8	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network