result

Gene information

Detail information of g381226

Location

Gene	Chr	Start	End	Strand
g381226	Scaffold_74472:HRSCAF_457558	147467	150499	-

Sequences

CDS

>g381226.t1
ATGATTAATACTATTTTATTCAAAGAAGAAGCCATCAGACTCATCAGCTTACTTGTTCACCTATCTACCTCCACTCTTATCTTTCAATGTAATGAATATCACTCTCACTCCCTCAACGCAACCTCACCATCCTTCTCTTTGATCTGCGACGAACGTATTCAAAAAATCACAGCCATAAAACTCTCGGAAGCCATCCACGTATGCGCCGCGCCTCACTGTTTCAAATCCTTCACCACCAAACCCGAGTTCCTGGAACATATTCACGGAAAGCACACTAACCTTCTAAATTCGAATGCCGAAAAAGGATCGCAAAATGACAACAATGCACCTAAACAAACATCGGCCGACGCTCAAAAACAGTCATTACAACCGGAAATGTCAACAGCACGAGCACCTCCTCCAGTCTCCACATTCTCTCCTGGCTCAAACTCCCAAAGCCAAGACCGTGGCGAAGACAGAAACCGATTACAGTCGAGAGATTCACAACCACCTAGGCCCAACAACTGGTTTCCTCCTCCTCCAGCTGGCCCATCTCCTTATATGCAGAATACAGATCAGTTCTCTTTAGACAATAGCAAACCCAGCCATAATAACAACATGAGCAATGAAAATTCGTTTTCGAATTTTCAAAGCATGCAACACCTAAACTACCAAATGCCCCAGACTTCGCAATTTCCATACAACAGTAGTAGTTTTCCCATTGAGAATAATATGCAGCAGCAGGCAATGGGAATGATGGGTGTACAGTTTCAGCAAGGTATTCAAATGAACAACAATCAAGGAGGCATGATGCAGGGTCCATATGGGAATATGATGAATAATAGTAACAGTAACAGTAATCAGGGAGCAGCAGGAGCAGGGATGGGATATTTTCAAGGCATGGGAATGGGTGCTGCTGGGTTGGTGGTTAAGAAGGAAAATGAGCAGCAGCAGCCACAGCAGAGTGGATTTGGAGGTGTTCAGGCAACACAGAACAACAGTGTTTTGCAACCTCCGTTGCCACGACAGCCACCTCCTGCTATGCCTCCACCATTGGTACAACAGCAGCAGATTGACAGAGGACGTGATTTTCCTCCTGGTTTCGGTTGGAGTGATCACCGTCCAAAAATTGACTGA

Protein

Gene

>g381226.t1
ATGATTAATACTATTTTATTCAAAGAAGAAGCCATCAGACTCATCAGCTTACTTGTTCACCTATCTACCTCCACTCTTATCTTTCAATGTAATGAATATCACTCTCACTCCCTCAACGCAACCTCACCATCCTTCTCTTTGATGTTTATAATATTGAAATACCTAAATAACCTTCGCACTCAAAAAAACCTCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTAACTTGTACATCAATAGTTCAAAGTGGCCATAGAAACTAAACTAATGTCAGTTAGCATAAGCTTAGATTGTGATTCTTTTTGTCCAAATACATTTTTCTAATTTTGAAAAATCTTTATATTTTGCGCAGGAGCATTAGCGTTGAATATGATAGTAGTTTGAACACTTTTACTTAAAACGTTTTAGGATGAGCAATAAAAGTGAATGGGCGACTATAAAAATCGGCTAGCTTTGCTATATAAAAAATTAGCATATTCTGTCAAGCATTTTATTTTGATTGCTTGATATGGTCATATTTTAAACTTTCCTTTCGTGCATTACTTCTATATTTGAATCTTAATATGCTAATGCATCTCTCATTGATCTTCTGATCCCAATAATTTCAGCTGCGACGAACGTATTCAAAAAATCACAGCCATAAAACTCTCGGGAGCCATCCACGTATGCGCCGCGCCTCACTATTTCAAATCCTTCACCACCAAACCCGAGTTCCTAGAACATATTCACTGAAAGCACGCTAACCCGAGTTAACATAAGCTTAAATTGTGATTCTTTTTGTCCAAATACATTTTCCTAATTTTGAAAAATCTTTATATTTTGCGCAGGAGCGTTAGCGTTGAATATGATAGTAGTTTGAACACTTTTACTTGAAACGTTTTAGGATGTGTAATAAAAGTGAATGGGCGACTATAAAAACCGGCCAGCTTTGCTATATAAAAAATCAGCATATTCTGTCAAGCATTTTTATTTTGATTGCTTGATATGATCATATTTTAAACTTTCCTTTCGTGCACTAGTACTATATTTGAATCTTAATATACTAATGCATATCTCATTGATCTTCCCATCCCAATAATTTCAGCTGCGACGAACGTATTCAAAAAATCACAGCCATAAAACTCTCGGAAGCCATCCACGTATGCGCCGCGCCTCACTGTTTCAAATCCTTCACCACCAAACCCGAGTTCCTGGAACATATTCACGGAAAGCACACTAACCTTCTAAATTCGAATGCCGAAAAAGGATCGCAAAATGACAACAATGCACCTAAACAAACATCGGCCGACGCTCAAAAACAGTCATTACAACCGGAAATGTCAACAGCACGAGCACCTCCTCCAGTCTCCACATTCTCTCCTGGCTCAAACTCCCAAAGCCAAGACCGTGGCGAAGACAGAAACCGATTACAGTCGAGAGATTCACAACCACCTAGGCCCAACAACTGGTTTCCTCCTCCTCCAGCTGGCCCATCTCCTTATATGCAGAATACAGATCAGTTCTCTTTAGACAATAGCAAACCCAGCCATAATAACAACATGAGCAATGAAAATTCGTTTTCGAATTTTCAAAGCATGCAACACCTAAACTACCAAATGCCCCAGACTTCGCAATTTCCATACAACAGTAGTAGTTTTCCCATTGAGAATAATATGCAGCAGCAGGCAATGGGAATGATGGGTGTACAGTTTCAGCAAGGTATTCAAATGAACAACAATCAAGGAGGCATGATGCAGGGTCCATATGGGAATATGATGAATAATAGTAACAGTAACAGTAATCAGGGAGCAGCAGGAGCAGGGATGGGATATTTTCAAGGCATGGGAATGGGTGCTGCTGGGTTGGTGGTTAAGAAGGAAAATGAGCAGCAGCAGCCACAGCAGAGTGGATTTGGAGGTGTTCAGGCAACACAGAACAACAGTGTTTTGCAACCTCCGTTGCCACGACAGCCACCTCCTGCTATGCCTCCACCATTGGTACAACAGCAGCAGATTGACAGAGGACGTGATTTTCCTCCTGGTTTCGGTTGGAGTGATCACCGTCCAAAAATTGACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	THU58406.1	3.4e-21	hypothetical protein C4D60_Mb03t13900
trEMBL	A0A4V4H635	2.5e-21	RING-type E3 ubiquitin transferase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G01160.1	44.12	3e-16	82.8		RING/U-box superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g381226	AT5G01160.1	102	46	3	34	132	90	183	44.12	3e-16	82.8

Ortholog group

Species	Genes
Allium cepa	g381224.t1; g381226.t1; g381227.t1
Allium fistulosum	AfisC1G06166
Allium sativum	Asa1G04461.1; Asa1G04467.1; Asa7G03357.1; Asa7G03358.1
Arabidopsis thaliana	AT5G01160.1
Oryza sativa	LOC_Os10g35190.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001510	P	RNA methylation
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004842	F	ubiquitin-protein transferase activity
GO:0016567	P	protein ubiquitination
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006464	P	cellular protein modification process
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007162	P	negative regulation of cell adhesion
GO:0008150	P	biological_process
GO:0009451	P	RNA modification
GO:0009987	P	cellular process
GO:0016070	P	RNA metabolic process
GO:0016071	P	mRNA metabolic process
GO:0016556	P	mRNA modification
GO:0016740	F	transferase activity
GO:0019538	P	protein metabolic process
GO:0019787	F	ubiquitin-like protein transferase activity
GO:0030100	P	regulation of endocytosis
GO:0030155	P	regulation of cell adhesion
GO:0030334	P	regulation of cell migration
GO:0030335	P	positive regulation of cell migration
GO:0032259	P	methylation
GO:0032446	P	protein modification by small protein conjugation
GO:0032879	P	regulation of localization
GO:0032991	C	macromolecular complex
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034708	C	methyltransferase complex
GO:0036211	P	protein modification process
GO:0036396	C	MIS complex
GO:0040012	P	regulation of locomotion
GO:0040017	P	positive regulation of locomotion
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0043414	P	macromolecule methylation
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045293	C	mRNA editing complex
GO:0045807	P	positive regulation of endocytosis
GO:0046483	P	heterocycle metabolic process
GO:0048518	P	positive regulation of biological process
GO:0048519	P	negative regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048523	P	negative regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051049	P	regulation of transport
GO:0051050	P	positive regulation of transport
GO:0051128	P	regulation of cellular component organization
GO:0051130	P	positive regulation of cellular component organization
GO:0051270	P	regulation of cellular component movement
GO:0051272	P	positive regulation of cellular component movement
GO:0060627	P	regulation of vesicle-mediated transport
GO:0065007	P	biological regulation
GO:0070647	P	protein modification by small protein conjugation or removal
GO:0071704	P	organic substance metabolic process
GO:0080009	P	mRNA methylation
GO:0090304	P	nucleic acid metabolic process
GO:1901360	P	organic cyclic compound metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:1902494	C	catalytic complex
GO:1990234	C	transferase complex
GO:2000145	P	regulation of cell motility
GO:2000147	P	positive regulation of cell motility
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15685	CBLL1; E3 ubiquitin-protein ligase Hakai	EC:2.3.2.27	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network