result

Gene information

Detail information of g38497


Location
GeneChrStartEndStrand
g38497CHR6109793504109794826-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020267700.19.6e-55high mobility group B protein 15-like
SwissprotQ9MAT6.11.6e-35Nucleosome/chromatin assembly factor group D 15
trEMBLA0A5P1EQT26.9e-55ARID domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G04880.133.541e-36 150HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain

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Ortholog group
SpeciesGenes
Allium cepag200612.t1; g38497.t1
Allium fistulosumAfisC6G02178; AfisC6G02180
Allium sativumAsa8G04505.1
Arabidopsis thalianaAT1G55650.1; AT3G13350.1
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF01388.18ARIDDomain3112841.11.9e-10

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005515Fprotein binding
GO:0000217FDNA secondary structure binding
GO:0005575Ccellular_component
GO:0000400Ffour-way junction DNA binding
GO:0000902Pcell morphogenesis
GO:0000904Pcell morphogenesis involved in differentiation
GO:0001067Fregulatory region nucleic acid binding
GO:0006790Psulfur compound metabolic process
GO:0008152Pmetabolic process
GO:0016049Pcell growth
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0006082Porganic acid metabolic process
GO:0006355Pregulation of transcription, DNA-templated
GO:0006807Pnitrogen compound metabolic process
GO:0040007Pgrowth
GO:0009653Panatomical structure morphogenesis
GO:0008134Ftranscription factor binding
GO:0008150Pbiological_process
GO:0009826Punidimensional cell growth
GO:0009846Ppollen germination
GO:0009856Ppollination
GO:0009860Ppollen tube growth
GO:0009889Pregulation of biosynthetic process
GO:0009932Pcell tip growth
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0044212Ftranscription regulatory region DNA binding
GO:0016043Pcellular component organization
GO:0016143PS-glycoside metabolic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019748Psecondary metabolic process
GO:0019757Pglycosinolate metabolic process
GO:0019760Pglucosinolate metabolic process
GO:0022414Preproductive process
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032989Pcellular component morphogenesis
GO:0042995Ccell projection
GO:0043436Poxoacid metabolic process
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044281Psmall molecule metabolic process
GO:0044464Ccell part
GO:0044706Pmulti-multicellular organism process
GO:0048468Pcell development
GO:0048588Pdevelopmental cell growth
GO:0048589Pdevelopmental growth
GO:0048856Panatomical structure development
GO:0048868Ppollen tube development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051704Pmulti-organism process
GO:0060255Pregulation of macromolecule metabolic process
GO:0060560Pdevelopmental growth involved in morphogenesis
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090406Cpollen tube
GO:0097159Forganic cyclic compound binding
GO:1901135Pcarbohydrate derivative metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1901657Pglycosyl compound metabolic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0120025
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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