result

Gene information

Detail information of g39090

Location

Gene	Chr	Start	End	Strand
g39090	CHR1	185698868	185710091	+

Sequences

CDS

Protein

Gene

>g39090.t1
ATGGCTTCTTCTCACGGGTTCACTGACCTACGAGATGTGTCTGCGATTAATCATCTGTATCTCGATTTGGGGTCTCCTCCCCTTCCCCGATGGAGACTTTATGGCGATCCCTGCTTGGAGTCATGGCATGGCGTCGAATGCTCCTTTAATACCATAACCAAAATAATCCTTGTTAATGAAGATTTAGGAGGACATTTGAGTGATTCACTTGGCGGTTTTCCATCACTTATATCACTTGATTTGAGCAATAACCATATTGGTGGAAAGATACCGGCAACCCTACCTTCCACAGTAAGAGAAATTTTCCTTTCATCAAACAATCTTAAGGGGACCATCCCGAATTTTTTATCAAAGTTAACACGCTTAACCAATATGACATTCAATGATAATCTTTTAGAAGGAGATTTGCCTGATTCTTTCCAGTCTCTCACCGCCTTAGTCAATTTGTAAGTTTTCATTTATTTTCTAAGTAACATTTACCCTTTACGTAATAATACATTTGTTCTAGCTTCTACGTGTACCTTTTTTTTACAGGGATATTTCCTCCAATAATTTGAGTGGTCGATTGCCGCCTTCCATGGGCAACTTGTCCGCTCTTACTACACTGTGAGTTATCTTTATGTTGACTGGTTTTTATTGAGATTTATAGTGTAAATACCTTTAATAATACTTTGTTTTTTCACTTGTCACTTTACAGGAATATGGGAAATAATCGTTTGTCTGGAGTCCTCGATGTATTATCTGATCTTCCTCTTGTTGACCTGAACGTAGAGAATAATCTATTCTCTGGACATATTCCTCCTAAGCTGCTTAAAATTCCAAATTTCAGAAAAGATGGAAACTCATTTAATAGTAGCGTTCTTCTCCTTCCTTCAACACCTTTGCCTCCACCTATTCTTGTATCTGATGCACCTGCTCCTTCTGTTGGTAGCCATTTTGAAGCTATTAATCTTTCGGGAGGAAAAGAAGGAAAATCTATCTTAAAAGTTATTGCTTATGCAGTTATTACAATTGCCTCATTTATTGTTGTAGTGCTTGCAATTACCATTTGTATTTCAAAGTTAAAGGAACAGGCAATGGAAGATCCACCAATAACGAAATGTGATAAGCTGAAATGTATAGAGAGTGCAGAGTCAAGTATACCTACTACAATCATCAAACACAGTGGTAAGAACTTAAGTTTGTTATTCTTCTTTTTACATAGGTTCATTATTATGAAGGAAAACTCATTTATCATACCTTAGTGGTTTTCTCCGACAAAGTTTTTCAGTCACATAGTTTCGATATTTATGATAATAATACTGAACACATCTGTGTTAACCATAGTTTTTAAAACCCGACCCGACCTCGGTCGAACCGCGAGTAACCGCGGACTGTGGTCCATAAAGGCCAGGATCCGTGCACAAACCGTGGTTCAACCCTCCGACCGTGATTCAACCGTTTCTTCCAGCCATGGTCCAACCTTCTGCTGTTTATAATATAATTCTTTTGTCTACGCACCTGGAATTGCACTGCATGATTAATTATTTACTTATATCTAGGTGTAGCTACTATGTGTTTGTGTGTGATTATGGCTGCATTTTTTGTTTTGTTGTGTCGTGCTATATCATTATTATACTTGTGTTTTGAAGGGTTGCCATTGAATGCGCTGAAATATATTATGTGAAAAGTCTATGTTTAAAATATATTCACATTTTCACTATTAACAACCATTTGTGGTTCTTGACGGTTCGATCGATCGGACCTTCAAAACGTTTGACCCTGAGTCCTCACGATTTGACTCACGGTCGGGTTATAAAAACACGGGTGTTAATACATGGTTATCATTATTTTATCACATTTTTTTTAACCATTTTGCTCTTAGATTTTATATGCAACTGAAATGAACTTTAGTGTTTATTAGTTTTTTAACTGTGCAGTATATAACTTTATATGGATTTCAGGGAATTCTTTGTGCAGTACAGATTTTGCTCTGTTTATAATAGATATTTCAGTTTGAATCAATATATTAGTAGCAAGGAGAGTAAAAAGGATATGGTTCTATCAGATTAGAGGTATACTTAAATATGTTTCAGTTTAGAAGTATACTATATATTCAGGGAATACTTAATAAGTTTTTGTGTAACAACCGTCTCTACTTAAAAAGGCTTATTAATTTAAACATATCGTTAAATAAATCATTAGTATGTTGAATAAGACTTCTTCAAACCTATCATTGATATTCTACATTGCACATTTGCACATTTTCGTATACTTTTTGTTGAACGTTTGTTGAATTTGAAAACAGTTTTGGAAGATGATGCAGTAGAAGAACCAAAGGAAGCAGCATCAGACTACACCGTCCTTTTGAATTTCCAAAATTAGAGTGCCAAATAACCAAAGTAACATCGTTTTCTGTTGCATTACTTCAGCAATATACACATGGTTTCAGAAAAGAAAATCTGATTTGGAAGGACAGTGTAAGCAAGACCTATCTAGGGGAGCTTCCTGATGGTAAACTGCTGACACTTGTGAATCTTGACAATGCAAACTTGAAAGTAGAAGCAGGCGATTTTCTTGATTTCATATCAGCCATCTCATACCTTCATAGCCCTTATATAATGGAGCTTGTGGGTTACTGCATGGAGTATGACCAAAGAGTACTTGTCTACAACTACTTTAGTGATACAACTCTTCATGACATACTTCATAATGAAGCTGAATTAAAAAAGAATCTTTCATGGATTGCTCGTGTTAAGATTGCACTTGGGGCCGCAAGGGCATTGGAGTATCTCCATGAGCGCTGTCTTCCTCCTGTTACTTATAAAATATTCAACTCCTCAAAAATCTTTGTTGATGAATTTATGAATGTACGTGTTTCAGAATGCGGCCTTGCTTCACTGACAACATCAATCTACAACAATCAGGTAAATTATGTTCACTTCTTGTCAATACTCTTTCTTAACATTTATCTTTACTTCATCCAGTGCATTTGTAGGAAAATCCGAGTTTAAGAATTATTATACATAGATAAAACAAAATGCTTTGGTGTATGTTTTTGTTTTTCAGATTTCCAGTAAATAAACGACAACATAAAATTATATACTGCAGGTGCATGAACAAATTGGCAGTGAGGCTCCGGAAGTTTGCAATTGCAGGTCATGCACTGATAAAAGTGATGTGTATAGTTTTGGTGTGGTAATGTTAGAATTACTTACTGGACGCAAGCCATATGAGAGATGGAGGCCTGGAGAAGAAGCATATTTAGTGAGGTGGGCAAGCTCTAAGCTAAAGCATATGTATGACATTGATGGTTTGTTGGGTATTGTGGATCCTTGTTTGAATGGAGAGGTTGCTATGGAATCACTTTCAAGTTTTGCTGATATTGCATGCCGTTGTATTCAGCAACAACCTTGGTTTAGAGATGCCATGTCCAAAGTTGTACTGGACCTCATCAATTTGATGGACAATATGAAGAAACAACTCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268790.1	6.2e-110	protein STRUBBELIG-RECEPTOR FAMILY 3-like isoform X2
Swissprot	Q06BH3.2	2.7e-78	Leucine-rich repeat receptor kinase-like protein SRF1
trEMBL	A0A5P1EJ32	4.5e-110	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G22130.1	35.87	9e-93	338	SRF8	STRUBBELIG-receptor family 8

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g39090	AT4G22130.1	669	326	18	1	577	16	673	35.87	9e-93	338
g39090	AT4G22130.2	524	280	11	85	578	20	533	38.93	8e-88	321
g39090	AT1G53730.1	668	329	19	5	568	24	682	33.83	6e-80	295

Ortholog group

Species	Genes
Allium cepa	g12460.t1; g39090.t1; g529452.t1; g529456.t1
Allium fistulosum	AfisC7G03849; AfisC7G05709
Allium sativum	Asa3G02091.1; Asa3G02099.1; Asa3G02100.1; Asa3G02104.1; Asa3G02105.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	337	507	81.0	7.4e-23

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005623	C	cell
GO:0005911	C	cell-cell junction
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0007623	P	circadian rhythm
GO:0008150	P	biological_process
GO:0009506	C	plasmodesma
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0030054	C	cell junction
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0048511	P	rhythmic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0055044	C	symplast
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network