result

Gene information

Detail information of g391835


Location
GeneChrStartEndStrand
g391835Scaffold_75769:HRSCAF_458855204904205446-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020242190.13.9e-16protein TIFY 10c-like
SwissprotQ9LMA8.12.0e-09Jasmonate ZIM domain-containing protein 1
trEMBLA0A075BFL74.8e-16Protein TIFY

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G19180.128.212e-1371.6AtJAZ1;JAZ1;TIFY10Ajasmonate-zim-domain protein 1

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Ortholog group
SpeciesGenes
Allium cepag156049.t1; g156061.t1; g171198.t1; g228651.t1; g228670.t1; g319478.t1; g319480.t1; g357160.t1; g376573.t1; g389591.t1; g391822.t1; g391829.t1; g391835.t1; g391839.t1; g391842.t1; g466477.t1; g522402.t1
Allium fistulosumAfisC2G05056; AfisC7G02971; AfisC8G05893; AfisC8G05898; AfisC8G05899; AfisC8G05900; AfisC8G05903; AfisC8G05904; AfisC8G05906; AfisC8G05907; AfisC8G05909; AfisC8G05913; AfisC8G05916; AfisC8G05920; AfisC8G05922; AfisC8G05923; AfisC8G05925; AfisC8G05955
Allium sativumAsa0G01028.1; Asa0G01029.1; Asa0G02987.1; Asa0G05575.1; Asa0G05603.1; Asa1G00005.1; Asa1G00023.1; Asa1G00028.1; Asa1G00030.1; Asa1G00035.1; Asa1G00036.1; Asa1G00038.1; Asa1G00039.1; Asa1G00040.1; Asa1G00041.1; Asa1G00043.1; Asa1G00044.1; Asa1G04732.1; Asa3G00571.1; Asa3G00573.1; Asa3G00575.1; Asa3G05094.1; Asa5G03418.1; Asa7G00114.1
Arabidopsis thaliana
Oryza sativaLOC_Os03g08320.1; LOC_Os03g08330.1; LOC_Os10g25290.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF06200.11tifyDomain629234.77.3e-09
PF09425.7CCT_2Motif10813343.12.5e-11

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003712Ftranscription cofactor activity
GO:0003714Ftranscription corepressor activity
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006950Presponse to stress
GO:0008150Pbiological_process
GO:0009611Presponse to wounding
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009966Pregulation of signal transduction
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010646Pregulation of cell communication
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0023051Pregulation of signaling
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031347Pregulation of defense response
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048583Pregulation of response to stimulus
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process
GO:0080134Pregulation of response to stress
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000022Pregulation of jasmonic acid mediated signaling pathway
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K13464JAZ; jasmonate ZIM domain-containing proteinEC:- Plant hormone signal transductionko04075

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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