result

Gene information

Detail information of g391943


Location
GeneChrStartEndStrand
g391943Scaffold_75778:HRSCAF_458864135555140604+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020249811.17.3e-82transcriptional corepressor LEUNIG isoform X1
SwissprotQ9FUY2.21.5e-71Protein ROTUNDA2
trEMBLA0A5P1FVK75.3e-82LisH domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT4G32551.153.335e-74 275LUG;RON2LisH dimerisation motif;WD40/YVTN repeat-like-containing domain

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag135582.t1; g135584.t1; g341317.t1; g391943.t1; g391962.t1; g421374.t1; g471935.t1; g521292.t1
Allium fistulosumAfisC1G09289
Allium sativumAsa0G01063.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00400.29WD40Repeat7811420.20.00071
PF00400.29WD40Repeat15819424.82.5e-05
PF00069.22PkinaseDomain19834387.39.4e-25

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0001101Presponse to acid chemical
GO:0008152Pmetabolic process
GO:0001558Pregulation of cell growth
GO:0001666Presponse to hypoxia
GO:0003002Pregionalization
GO:0003006Pdevelopmental process involved in reproduction
GO:0005975Pcarbohydrate metabolic process
GO:0005976Ppolysaccharide metabolic process
GO:0006355Pregulation of transcription, DNA-templated
GO:0006950Presponse to stress
GO:0006974Pcellular response to DNA damage stimulus
GO:0006979Presponse to oxidative stress
GO:0007275Pmulticellular organism development
GO:0007389Ppattern specification process
GO:0009888Ptissue development
GO:0008150Pbiological_process
GO:0042493Presponse to drug
GO:0009636Presponse to toxic substance
GO:0010038Presponse to metal ion
GO:0009414Presponse to water deprivation
GO:0009415Presponse to water
GO:0009605Presponse to external stimulus
GO:0009607Presponse to biotic stimulus
GO:0009611Presponse to wounding
GO:0051707Presponse to other organism
GO:0009617Presponse to bacterium
GO:0009620Presponse to fungus
GO:0009624Presponse to nematode
GO:0009628Presponse to abiotic stimulus
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009791Ppost-embryonic development
GO:0009798Paxis specification
GO:0009845Pseed germination
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009909Pregulation of flower development
GO:0009943Padaxial/abaxial axis specification
GO:0009944Ppolarity specification of adaxial/abaxial axis
GO:0009955Padaxial/abaxial pattern specification
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010035Presponse to inorganic substance
GO:0010073Pmeristem maintenance
GO:0010154Pfruit development
GO:0010191Pmucilage metabolic process
GO:0010214Pseed coat development
GO:0010243Presponse to organonitrogen compound
GO:0010272Presponse to silver ion
GO:0010393Pgalacturonan metabolic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0014070Presponse to organic cyclic compound
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0046677Presponse to antibiotic
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0022603Pregulation of anatomical structure morphogenesis
GO:0022604Pregulation of cell morphogenesis
GO:0033554Pcellular response to stress
GO:0030307Ppositive regulation of cell growth
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032504Pmulticellular organism reproduction
GO:0036293Presponse to decreased oxygen levels
GO:0040008Pregulation of growth
GO:0042221Presponse to chemical
GO:0043170Pmacromolecule metabolic process
GO:0043207Presponse to external biotic stimulus
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0045927Ppositive regulation of growth
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0045995Pregulation of embryonic development
GO:0046898Presponse to cycloheximide
GO:0048316Pseed development
GO:0048359Pmucilage metabolic process involved in seed coat development
GO:0048507Pmeristem development
GO:0048509Pregulation of meristem development
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0048580Pregulation of post-embryonic development
GO:0048608Preproductive structure development
GO:0048609Pmulticellular organismal reproductive process
GO:0048638Pregulation of developmental growth
GO:0048639Ppositive regulation of developmental growth
GO:0048731Psystem development
GO:0048831Pregulation of shoot system development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051094Ppositive regulation of developmental process
GO:0051128Pregulation of cellular component organization
GO:0051130Ppositive regulation of cellular component organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051510Pregulation of unidimensional cell growth
GO:0051512Ppositive regulation of unidimensional cell growth
GO:0051704Pmulti-organism process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0060992Presponse to fungicide
GO:0061458Preproductive system development
GO:0065001Pspecification of axis polarity
GO:0065007Pbiological regulation
GO:0070482Presponse to oxygen levels
GO:0071216Pcellular response to biotic stimulus
GO:0071217Pcellular response to external biotic stimulus
GO:0071496Pcellular response to external stimulus
GO:0071704Porganic substance metabolic process
GO:0080001Pmucilage extrusion from seed coat
GO:0080090Pregulation of primary metabolic process
GO:0090351Pseedling development
GO:0097305Presponse to alcohol
GO:1901654Presponse to ketone
GO:1901698Presponse to nitrogen compound
GO:1901700Presponse to oxygen-containing compound
GO:1902074Presponse to salt
GO:1902183Pregulation of shoot apical meristem development
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000024Pregulation of leaf development
GO:2000026Pregulation of multicellular organismal development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2001141Pregulation of RNA biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.