result

Gene information

Detail information of g39331

Location

Gene	Chr	Start	End	Strand
g39331	Scaffold_23516:HRSCAF_218868	603978	605578	+

Sequences

CDS

Protein

Gene

>g39331.t1
ATGCTACAGCCGGAGAAGGTCAGAGGTCCTATAATGGAAGGCACTGCAATAAATTCTTCACTTAAGAGGGCTGTCCTTACGGGGACATGTGTACTTTTTTGCATGATGAGCAGTCTATAAGCCAGGGAGAGTGTGGCTATAAGTCTTTCTCCTTCGTTCGGGAGTAGTAATTAAGCAGCAGGGGCGAATGGGATTAATCAAAAACCTTCAAATTGGAAGACTAGGATTTGTAACAAGTGGGAAATGACTGGGTATTGCCCATCTAAGAGCAAGTGTCATTTTGCTCATGGGGCTGTAGGTATGGTGTTTTGATTTTTCTTATGCATACATTTTGATTTGCGTTAAAGCATTTATTCTTGAACTCCGATTTTCCACTGGCGGGTGCAACAGTTTTACCTATCCTGCCACCAACCCTTGCAAGAAAAATATCAAGCTCGCTTATGCTAAGGAGTCGTATACTTTCATCTCAACGTTGCAATCCTCAGATGCAACTTCCATCACGTCGTCAACTTCCTTCACCACATCTGCTACCTCCTTTCACCAACTGCCACCTTTCGGAGCCCTTTCTTTGACCTCAACTTTTTAGAACCTAATATAGTATATTGATTCTGAAGACTAATTGACATATAATAATAACAATAATAATAGAAATAAAATTACCTCAATGTTCATATTGATTGACATTTGTCCGTATGAATGACTTTATAGTACAGTATTCATATTAGTTCATAAAGTGAAATCAAACCATGTTTATGTACCAAAATATTCTCAACTTCAGGGATTGTGATTTCTTGGTTCACTTAATCAAGTAGTCGATCTAGCATCAGAACTGCATTCAGTGTTTCATTTATAAAATAATGTTCTTACAACTTTGTATAAGAATTACTGAGTAATGCAACTCATTTTAGAATATAAGCCAATGTACAGAGAATTGGTACTCTTCGATTCATTATGCATAGAAACAGATATTTACTGTCATTACATAAACTTACTGTTTGATCATGCTAATTACATGAATTTCTTTTTAGCAACATGATAGATTTCTCCCAAAATCTTACATGTTATGCAATTATTCCCCGAACCACCCCCACCCCCAACCCCCCCCCCCCCCCCCCCAAAAAAAAAAATTCTAGACCCGCCCCTGCACATACCTAAGTAGTCTTGTATTGGATAAAGTAGTACTTAACCTTTTCTTCTATGAGTTTTCACAAGTCACAAACTCTATCCAGCGTCTATACTGTATGGAACTAGAAGGCTAAGCTGCATAAGTGACACCACATTATATAGCAATTACAGCTAACAACCATTACTGTCTTGTAGAACTCCACTTATATGGTGGTGGGCTAGTAGAAAATGAAGGTAGAGATGCTGCTTCAGGTGCCACAGATTCAAAACAGACTGGTACACCATTAAAAGCAAACAACGAGACTAATGTAGCTTCCAACTTATCATCTGTGGCTCGTCAAGATATTTATCACATGGGACTTGCTTCACAGAGAACTGCCCTTAACCCAAGGCAAGGACAAAGGCCTCTTCAAAAATGGAAAGGCCCTGATAAAATTAGTTTGATTTATGGAGATTGGATTGATGATTTCGAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK80489.1	1.1e-48	uncharacterized protein A4U43_C01F18290
Swissprot	Q84UQ3.1	1.2e-39	Zinc finger CCCH domain-containing protein 56
trEMBL	A0A5P1FTZ9	7.9e-49	Zinc finger CCCH domain-containing protein 12-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G32360.1	57.81	2e-35	144		Zinc finger (CCCH-type) family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g39331	AT1G32360.1	128	51	2	37	161	257	384	57.81	2e-35	144
g39331	AT2G35430.1	128	45	3	37	161	140	252	50.78	6e-29	123
g39331	AT3G19360.1	122	54	6	41	160	270	374	40.16	4e-14	74.3

Ortholog group

Species	Genes
Allium cepa	g133578.t1; g39331.t1
Allium fistulosum	AfisC2G00951; AfisC2G05550; AfisC6G00866
Allium sativum	Asa4G03177.1; Asa5G00972.1
Arabidopsis thaliana	AT1G32360.1; AT2G35430.1
Oryza sativa	LOC_Os08g06330.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00642.21	zf-CCCH	Family	41	66	27.6	1.8e-06

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003723	F	RNA binding
GO:0003729	F	mRNA binding
GO:0003730	F	mRNA 3'-UTR binding
GO:0005829	C	cytosol
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006417	P	regulation of translation
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009893	P	positive regulation of metabolic process
GO:0009894	P	regulation of catabolic process
GO:0009896	P	positive regulation of catabolic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010608	P	posttranscriptional regulation of gene expression
GO:0010629	P	negative regulation of gene expression
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0017148	P	negative regulation of translation
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0031329	P	regulation of cellular catabolic process
GO:0031331	P	positive regulation of cellular catabolic process
GO:0032268	P	regulation of cellular protein metabolic process
GO:0032269	P	negative regulation of cellular protein metabolic process
GO:0034248	P	regulation of cellular amide metabolic process
GO:0034249	P	negative regulation of cellular amide metabolic process
GO:0043487	P	regulation of RNA stability
GO:0043488	P	regulation of mRNA stability
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048519	P	negative regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048523	P	negative regulation of cellular process
GO:0050779	P	RNA destabilization
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051246	P	regulation of protein metabolic process
GO:0051248	P	negative regulation of protein metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061013	P	regulation of mRNA catabolic process
GO:0061014	P	positive regulation of mRNA catabolic process
GO:0061157	P	mRNA destabilization
GO:0061158	P	3'-UTR-mediated mRNA destabilization
GO:0065007	P	biological regulation
GO:0065008	P	regulation of biological quality
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903311	P	regulation of mRNA metabolic process
GO:1903313	P	positive regulation of mRNA metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network