result

Gene information

Detail information of g395340

Location

Gene	Chr	Start	End	Strand
g395340	Scaffold_76172:HRSCAF_459258	176844	178949	-

Sequences

CDS

Protein

Gene

>g395340.t1
ATGGATATTGATTTAACCTCCTCACTTTCAATTCAATCTTATTCTGAAATTTCAAATGAATTTCAAGATCTCCAGGAACTATACAATGATTGTAAGGATCAAGACTTAACGAATAGCCTTTATGAGTTTCCAGACCTTGATGATATTAGCTTTCAACCTCAAATCAATAACGATAGCATAGAAATACTATCGTTGAGCGATGTTGATTTTCCAATTTATGACGATCATCATCATCAAATTAATCGGTGTACTGCCATGGAGACAACACCATACCCTTCAAGAATTTCTTCTTTGTCTTCTAACTCTTCAATGGTCGTGGACCCAGTTGAACCTTTAAGTAATGTTTTTCAAATTTCAACTGGTTTTGCTAGCAATATTCCTGATTATAGCAGACTATTACATAAGCAAGAAGGCAACATAGATGTTAAACATTTGACGAGGGAAAAAACTGAAGACAGAAACCAAAAGAAATTAGAGAACGTGAGAGGGAAATGGACACTTGAAGAAGATAGGTATATTACATCCATTATTTCATTTTAATTATTTTTTTTATAATTATTTATTGAAATTGAAGTTAACATATGACGTTTCCAATATTAGGTTGTTATGTCGGCTGGTAGAGCAGTATGGATTGGGGAAGTGGTCTCAGATAGCACAATTTTTAAAAGGAAGAATTGGAAAGCAATGTAGGGAAAGATGGCACAATCATTTGAGGCCTAATATAAAGGTTAAATTATAACCCATCATTATTTAAACTAGTGCCTACTTTACTGTTCAGGGCTGATTTTTCTGAAATCCTTTTTTTTTCTTTAGTAAAACTTGTAGGTATTTCATGTAACTTTAATTATAAGAGGACATCAGATGCAAACAAGTTTACTTGCAAAAATTGCTTTTAGGAATGGTATATATTGTTAAGTACTAACTTAAATAGTCTATGAAATTTTACCACATATATTTATTATTCTCTCTCAAAAGTTCTTGGCATTTGTTAGAAAGAAAACATTTAATTATACTATTAATATGAAATTTCTACAATCGGATAAATAGCTTCTTTGCTAAATTCAAGTAACTATGATTGTATATGGATTGTAGTGCACATTAGTTTATCAAGGTTAATCGACATAGGAAGACAAAAGATAGGTAAAATAATTTGTAGTTTTTATTTTTATTGGACATAATCATAAATGGCATAACCGATTGACTTAAATATTAAATAATATTTTCTCATTTCCTTTCCTCTTTTATTTACATTAAAAATGTAGTTACTAAGGATAAATCAAGGATGCATTACTACTACATTTAATTAGTTAATATAGAGTGTCAGTTAGCAATATTAATTACTTCTCATTCTATATAATTTAGCATTATACTAATTGATAATGAATTTAACTTTATGTTGCTTGTATTGTTCTTCGTTTTGACAATCCTTTTTCGTTTTTAACGTTCAAAATTCTATTTTTTCCATCCTGTATTGTACTTAAATTTTACAGTCTTTTTGTGTTTTTTACGTTCAAACAGAAGGATTTTTGGACAGAAGAGGAAGATCGAATTTTGATTAGTGCACATATAGAAATTGGAAACAAGTGGGCAGAAATTGCAAAATATGTGCCTGGTAGAACTGAGAATTCGATCAAGAACCGTTGGAATGCAACAAAAAGAAGACAATTCTCAAGAAAGCGTACTCATGCTTCAAAGTACCCTAAGTCAAGCACTCTTCTACAGAATTATATCAAGAGCTTGGGTATGAAGCAGGAAAATCAACTAACAACTAGCTCTAAAAATAATAGCCTTCAGCCTCTTATGAGCATTAATAACCTTCATCCTCTTACAAGAATGAATAGCTTCCAGCCTCTTACAAGATTTAATAGCCTTCAACCCCTAACCAACTTTAATAAGATGAATGACTTTTACACTGCTCCACCCCTTCATACTCATCGTCAATATGGCGTGAATGGTCTTGGTAAAAGAGATGATTATGGGGTGAAAATGGAATGGGATACTATAACTTCATGCTTTAATAACGGGAAGATGGAGATGGATCTCGTAGAGATGATCAACCGCAACAATAAACCATGTTTTAATAACAATTCCTTGTGTTCCTTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK79403.1	3.8e-82	uncharacterized protein A4U43_C01F6000
Swissprot	Q9S7L2.1	3.2e-49	Myb-related protein 98
trEMBL	A0A5P1FNV7	2.7e-82	Transcription factor MYB98-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G18770.1	72.99	1e-52	204	AtMYB98;MYB98	myb domain protein 98

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g395340	AT4G18770.1	137	35	2	153	289	208	342	72.99	1e-52	204
g395340	AT3G27785.1	153	60	2	156	306	183	334	58.82	5e-47	185
g395340	AT5G58850.1	176	66	3	150	313	95	267	53.98	2e-46	183

Ortholog group

Species	Genes
Allium cepa	g115209.t1; g141972.t1; g395340.t1; g426003.t1; g471657.t1; g514873.t1; g61789.t1
Allium fistulosum	AfisC3G04070; AfisC3G05329; AfisC4G04164; AfisC4G04166; AfisC4G04204; AfisC4G04211; AfisC4G04212; AfisC4G04213; AfisC6G05872; AfisC6G05891; AfisC6G05895; AfisC6G05896; AfisC6G05897; AfisC6G05910; AfisC6G05913; AfisC6G06039; AfisC6G06040; AfisC8G04156; AfisC8G04165; AfisC8G04193; AfisC8G04195; AfisC8G04325
Allium sativum	Asa2G03130.1
Arabidopsis thaliana	AT2G25230.1; AT4G18770.1; AT5G40430.1
Oryza sativa	LOC_Os06g06740.1; LOC_Os12g07610.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	162	208	58.8	4e-16
PF00249.28	Myb_DNA-binding	Domain	217	256	57.4	1.1e-15

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network