result

Gene information

Detail information of g40147

Location

Gene	Chr	Start	End	Strand
g40147	Scaffold_23961:HRSCAF_221547	167059	170842	-

Sequences

CDS

>g40147.t1
ATGCTCCTCCTCTTCTTCTTCCTCCTCCCATTCCTGCCGCACCACCACAGCCTCACTCACGACCAACAATCAACACTTAACTCCCTCATCTCTCTCAATAAAACCTTCTCCCTCCCCAAATGGGACCCACTCACCCCCTACTGCACCTGGCCGGGCCTCGCCTGCGACTCTACCCGCCACCGCCACCTTATCTCCCTCAACCTCTCCTCCTCCAATCTCTCCACCACCCTCACCTCCTTCCCTTCCTTCCCCCATCTCCGCATCCTCTCCCTCTCCGACAACCTCCTCTCCGGCCCCATCCCTCCATCACTCTCCCTCCTCCCCCGCCTCCTCCACCTCAACCTCTCCAACAACCTCTTCAACTCCTCCATCCCTCCCTCTCTCTTCTCCCTCACCTCCCTTCAGGTCCTCGATCTCTACAATAACAACCTCACCGGCGACCTCCCTCTCCGCGCCATCGATTTGCCCAATCTCCTCCACCTTCATCTCGGCGGCAACTTCTTCTCCGGCTCCATCCCCCCTCAATACGGCAGCTGGAGGTATTTGCACTACCTCGCCCTTTCCGGCAACGAGTTGAGCGGTCATATCCCTCCCGAAATCGGAAACCTATCCAGTTTGCGCGAGCTCTATCTCGGTTACTTCAACAGCTACGAAGGCGGGATTCCTAAACAGATCGGGAAACTGAAGAACCTTGTCAGGCTCGACATAGCGAACTGCGGTATCACTGGCCAGATCCCTGACGAAATCGGAGAGCTACAGAATCTCGATACTCTGTTCGCTCAGGTCAATGGGATATCCGGCGAGATTCCAGCCGCCATTGGTACGCTGAAGAGTTTGAAATCACTTGATTTAAGCAACAATGCACTGATTGGAAACATTCCGACGAGTGTCCAATCTTTGAATAACTTGACATTGTTGAATCTCTTCAGAAACAAATTATCTGGAGACATCCCAGAATTTATAGGCGATTTGCCTAAATTGGAAGTGCTGCAACTTTGGGAGAACAATTTCACAGGGAATATTCCAGCAAGACTTGGATCAAGTGGCAAGCTGCAGCTATTGGATTTATCAAGTAACAAACTGACAGGTAATTTACCTGATGAACTATGTGTTGGAAATAGTCTTCATACTTTGATTGCACTGGGTAATTTCTTGTTCGGATCGATTCCTCAGAGTTTAGGACAATGTAGATCATTGAGTAGGATTAGAATGGGAGAGAATTTCTTGAATGGTTCAATTCCTTCTGGACTATTTAGCTTGCCTGAGCTTGCTCAGGTAGAGCTTCAAGATAATATGTTAGTGGGAGAGTTTCCAAACACCGATGGGAAGCAAATTTCTACAAACCTTGGACAGATCAACCTTGCAAATAATCGATTATCAGGGGGTTTGCCTTCTTCTATTGGGGATTTTTCAGGTATTCAGAAGCTTCTGTTGAATCAGAACTTCTTTAACTGTAGCATTCCTGAAGAAATCGGAAAGCTACAGCAGTTGTCTAAGTTGGATTTGAGTGGAAATCGTTTTTCAGGTCTGATTCCTCCTGGGATCAGTAAATGTAAATTGCTAACGTTTGTCGATTTCAGTCGTAATAACTTATCAGGCGAGATTCCTTCTGAGATCACAAGCATGAGAATCCTGAACTATCTTAATCTTTCAAGAAATCAATTAAGTGGTGAGATACCCCTTACCATATCAACAATGCAGAGCTTAACTGCGGTCGATTTCTCCTATAATAAACTATCCGGATTAGTGCCTGGAACTGGCCAGTTCAGCTACTTCAATTCCACTTCCTTCCTAGGCAACCCGGAACTATGCGGACCCTACTTAGGCCCTTGCAAGTTCGGCCCTTCTAACAGTACCATGCCAGGTCACTCAAAAGCTTCCCTTTCACCTTCATTCAAGCTACTGCTAGTCATCGGTCTTCTCATATGCTCGATAGCATTTGCAATTGCCGCCATTATCAAAGCCCGAGCTCTAAAAAGAGCGAGCGATGCACGTGCATGGAAGCTAACAGCATTTCAGCGACTAGACTTCACATGTGATGATGTCCTCGATTCTTTGAAAGAAGAGAACATAATAGGCAAGGGAGGAGCTGGCATAGTGTACAAAGGCACGATGCCTAATGGTGATTTAGTAGCAGTTAAAAGACTTCCGGTGATGACGCGTGGCGCTTCTCACGACCATGGATTCAATGCTGAAATACAAACACTGGGCAGGATCAGACATAGGCACATTGTGAGGTTGCTAGGGTTCTGCTCTAACCATGACACTAATCTTTTGGTTTATGAGTACATGCCTAATGGCAGTTTAGGAGAAGTTTTGCATGGGAAGAAAGGAGGGCATTTGCATTGGGACACTAGGTATAAAATCGCAGTTGAAGCGGCTAAAGGGCTGTGTTATCTGCACCACGATTGCTCTCCTTTGATACTCCATAGAGACGTGAAGTCGAACAACATTCTTCTCGATTCGAATTTTGAGTCTCATGTTGCTGATTTTGGTCTTGCTAAGTTCTTACAGGACTCGGGCACTTCAGAGTGTATGTCTGCAATTGCTGGTTCCTACGGTTACATTGCTCCAGAATACGCTTACACACTTAAGGTAGACGAAAAGAGCGACGTATACAGCTTTGGGGTTGTACTGCTCGAGCTAGTGAGTGGTAGAAAACCAGTCGGAGAGTTCGGGGATGGGGTCGACATAGTCCAATGGATTCGAACAACAACCAATTCGAACAAGGAAAACGTCCTCAAAATACTCGACCCACGTCTTCCCACCGTGCCCCTTCACGAGGCCATGCACATGTTCTACGTGGCCATGCTCTGCGTGGAAGATCAAAGCGTCGAGCGTCCCACGATGAGGGAAGTCGTTCAAATCTTAACCGAGCTTCCTCAGCCTTCTTCCAAGCACGAAGATGATCAGAAGGGTAGTGATGGTAATTCGCCTACAGCTGATCTTTTAAGTTAA

Protein

Gene

>g40147.t1
ATGCTCCTCCTCTTCTTCTTCCTCCTCCCATTCCTGCCGCACCACCACAGCCTCACTCACGACCAACAATCAACACTTAACTCCCTCATCTCTCTCAATAAAACCTTCTCCCTCCCCAAATGGGACCCACTCACCCCCTACTGCACCTGGCCGGGCCTCGCCTGCGACTCTACCCGCCACCGCCACCTTATCTCCCTCAACCTCTCCTCCTCCAATCTCTCCACCACCCTCACCTCCTTCCCTTCCTTCCCCCATCTCCGCATCCTCTCCCTCTCCGACAACCTCCTCTCCGGCCCCATCCCTCCATCACTCTCCCTCCTCCCCCGCCTCCTCCACCTCAACCTCTCCAACAACCTCTTCAACTCCTCCATCCCTCCCTCTCTCTTCTCCCTCACCTCCCTTCAGGTCCTCGATCTCTACAATAACAACCTCACCGGCGACCTCCCTCTCCGCGCCATCGATTTGCCCAATCTCCTCCACCTTCATCTCGGCGGCAACTTCTTCTCCGGCTCCATCCCCCCTCAATACGGCAGCTGGAGGTATTTGCACTACCTCGCCCTTTCCGGCAACGAGTTGAGCGGTCATATCCCTCCCGAAATCGGAAACCTATCCAGTTTGCGCGAGCTCTATCTCGGTTACTTCAACAGCTACGAAGGCGGGATTCCTAAACAGATCGGGAAACTGAAGAACCTTGTCAGGCTCGACATAGCGAACTGCGGTATCACTGGCCAGATCCCTGACGAAATCGGAGAGCTACAGAATCTCGATACTCTGTTCGCTCAGGTCAATGGGATATCCGGCGAGATTCCAGCCGCCATTGGTACGCTGAAGAGTTTGAAATCACTTGATTTAAGCAACAATGCACTGATTGGAAACATTCCGACGAGTGTCCAATCTTTGAATAACTTGACATTGTTGAATCTCTTCAGAAACAAATTATCTGGAGACATCCCAGAATTTATAGGCGATTTGCCTAAATTGGAAGTGCTGCAACTTTGGGAGAACAATTTCACAGGGAATATTCCAGCAAGACTTGGATCAAGTGGCAAGCTGCAGCTATTGGATTTATCAAGTAACAAACTGACAGGTAATTTACCTGATGAACTATGTGTTGGAAATAGTCTTCATACTTTGATTGCACTGGGTAATTTCTTGTTCGGATCGATTCCTCAGAGTTTAGGACAATGTAGATCATTGAGTAGGATTAGAATGGGAGAGAATTTCTTGAATGGTTCAATTCCTTCTGGACTATTTAGCTTGCCTGAGCTTGCTCAGGTAGAGCTTCAAGATAATATGTTAGTGGGAGAGTTTCCAAACACCGATGGGAAGCAAATTTCTACAAACCTTGGACAGATCAACCTTGCAAATAATCGATTATCAGGGGGTTTGCCTTCTTCTATTGGGGATTTTTCAGGTATTCAGAAGCTTCTGTTGAATCAGAACTTCTTTAACTGTAGCATTCCTGAAGAAATCGGAAAGCTACAGCAGTTGTCTAAGTTGGATTTGAGTGGAAATCGTTTTTCAGGTCTGATTCCTCCTGGGATCAGTAAATGTAAATTGCTAACGTTTGTCGATTTCAGTCGTAATAACTTATCAGGCGAGATTCCTTCTGAGATCACAAGCATGAGAATCCTGAACTATCTTAATCTTTCAAGAAATCAATTAAGTGGTGAGATACCCCTTACCATATCAACAATGCAGAGCTTAACTGCGGTCGATTTCTCCTATAATAAACTATCCGGATTAGTGCCTGGAACTGGCCAGTTCAGCTACTTCAATTCCACTTCCTTCCTAGGCAACCCGGAACTATGCGGACCCTACTTAGGCCCTTGCAAGTTCGGCCCTTCTAACAGTACCATGCCAGGTCACTCAAAAGCTTCCCTTTCACCTTCATTCAAGCTACTGCTAGTCATCGGTCTTCTCATATGCTCGATAGCATTTGCAATTGCCGCCATTATCAAAGCCCGAGCTCTAAAAAGAGCGAGCGATGCACGTGCATGGAAGCTAACAGCATTTCAGCGACTAGACTTCACATGTGATGATGTCCTCGATTCTTTGAAAGAAGAGAACATAATAGGCAAGGGAGGAGCTGGCATAGTGTACAAAGGCACGATGCCTAATGGTGATTTAGTAGCAGTTAAAAGACTTCCGGTGATGACGCGTGGCGCTTCTCACGACCATGGATTCAATGCTGAAATACAAACACTGGGCAGGATCAGACATAGGCACATTGTGAGGTTGCTAGGGTTCTGCTCTAACCATGACACTAATCTTTTGGTTTATGAGTACATGCCTAATGGCAGTTTAGGAGAAGTTTTGCATGGGAAGAAAGGAGGGCATTTGCATTGGGACACTAGGTATAAAATCGCAGTTGAAGCGGCTAAAGGGCTGTGTTATCTGCACCACGATTGCTCTCCTTTGATACTCCATAGAGACGTGAAGTCGAACAACATTCTTCTCGATTCGAATTTTGAGTCTCATGTTGCTGATTTTGGTCTTGCTAAGTTCTTACAGGACTCGGGCACTTCAGAGTGTATGTCTGCAATTGCTGGTTCCTACGGTTACATTGCTCCAGGTACTTCCTTCTATACCTTTTTCAGTATGTTGTTTACGTTGCATAGTAACTATTTAATGAAATACATTCCCATGTAACAAACTTGTTTTAGTGGTTATAATTATTTTAATCGACAATTAAAAATAGAAAGAAAAAGTGAGTGAACCCCGACATTCTGGGTTGAAACCATGGTCCGCTTTAAAAACTTTATAGCTATGTTCATGATTCGGTCTATGATGTTAACTATTCATTAGATATTTTTAGCATGTGTTGTGGACCTCTTTGACATGTTACTAAACCAAATATGTTAAAATTTTACAACCTAAAAGCAGTGTCTGGTCCCAATTTTTTTAAGTGTGAGAGATAACCGCATTTGTTTGTTACATGCACACTTTTCATATCTTGCTTCCTCACACTTTGCATGTCTACCAACTCTACTAATTAACATGCACAATTTTCATTTCTTGCTTTGTCACACTTTACATGTCTACCTACTCTTCTAACAGCTTAAAGTCATTTTTTGCATAAACGAATTTTTTTCTTTTTCTTTTCTAGAAGCTAAAATCATAAGATCAATTTTGATATGAGAAAAAACAAACTTTCAACGTTATTTTCTATTTTAATTTAATATTATACCTAAGATCTATTTGTTCACTTAAATGAGTATCGAATAACTTGTAAGTACTTAAATTTTAAGTGAATGGTAGAAAGTAAAAGTATTTGAATAGATAAATTGTTTCTGTTAACATATTTAATTGTAAAAATATGTTGGTTTTGACATATCAACGTACAACTTACAAGCTACTTTTGCTCAAATATACTAAAAAGATCCAAAATAATCATGCAGAATACGCTTACACACTTAAGGTAGACGAAAAGAGCGACGTATACAGCTTTGGGGTTGTACTGCTCGAGCTAGTGAGTGGTAGAAAACCAGTCGGAGAGTTCGGGGATGGGGTCGACATAGTCCAATGGATTCGAACAACAACCAATTCGAACAAGGAAAACGTCCTCAAAATACTCGACCCACGTCTTCCCACCGTGCCCCTTCACGAGGCCATGCACATGTTCTACGTGGCCATGCTCTGCGTGGAAGATCAAAGCGTCGAGCGTCCCACGATGAGGGAAGTCGTTCAAATCTTAACCGAGCTTCCTCAGCCTTCTTCCAAGCACGAAGATGATCAGAAGGGTAGTGATGGTAATTCGCCTACAGCTGATCTTTTAAGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010271550.1	5.4e-199	PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
Swissprot	O49545.1	6.6e-194	Protein BARELY ANY MERISTEM 1
trEMBL	A0A1D1YX31	5.4e-201	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G65700.1	73.96	0.0	1395	BAM1	Leucine-rich receptor-like protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g40147	AT5G65700.2	941	235	6	33	968	42	977	73.96	1395
g40147	AT5G65700.1	941	235	6	33	968	42	977	73.96	1395
g40147	AT3G49670.1	978	275	9	16	982	17	987	70.04	1353

Ortholog group

Species	Genes
Allium cepa	g181523.t1; g40147.t1; g445082.t1
Allium fistulosum	AfisC5G00428; AfisC6G01600; AfisC8G04703
Allium sativum	Asa1G01107.1; Asa6G06739.1; Asa8G04901.1
Arabidopsis thaliana	AT3G49670.1; AT4G20270.1; AT5G65700.1; AT5G65700.2
Oryza sativa	LOC_Os03g12730.1; LOC_Os03g56270.1; LOC_Os03g56270.2; LOC_Os07g04190.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12799.4	LRR_4	Repeat	132	173	30.1	4e-07
PF00560.30	LRR_1	Repeat	278	300	10.5	0.69
PF00560.30	LRR_1	Repeat	497	518	11.4	0.34
PF00069.22	Pkinase	Domain	687	955	157.2	4.6e-46

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0005102	F	receptor binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0007275	P	multicellular organism development
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009908	P	flower development
GO:0010073	P	meristem maintenance
GO:0010075	P	regulation of meristem growth
GO:0022414	P	reproductive process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0033612	F	receptor serine/threonine kinase binding
GO:0040008	P	regulation of growth
GO:0043621	F	protein self-association
GO:0044464	C	cell part
GO:0048229	P	gametophyte development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048507	P	meristem development
GO:0048509	P	regulation of meristem development
GO:0048608	P	reproductive structure development
GO:0048638	P	regulation of developmental growth
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0071944	C	cell periphery
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network