result

Gene information

Detail information of g405806

Location

Gene	Chr	Start	End	Strand
g405806	Scaffold_77452:HRSCAF_460538	528187	534309	-

Sequences

CDS

Protein

Gene

>g405806.t1
ATGGATTCAGCAAGAAATTGGTTTCACAAGAAATCCACGAGTAAGAGAAAAGAAGAAGAAACTGATAATGGCGATAACAATATTAATAAACCGCCATTAATAGATGAAGAAACAGCTTCGAATGCTACAAAGCAAAGAGTTGCTGCCGCAAAACAGTATATCGAGAATCATTATAAAGAGCAGATGAAGAATCTGCAGGAACGCAAGGAAAGGTATTACAATTTTGAGATATTAATGCTTAATTAATTAGGAGTTTTGAGTTTAGATTTGTTAGCTGTGCCACGCTATGCCGTACGGATCATTCTGTTATTACAACAATGGAAAGTAAGTTTTGCGGGTATTGACATTTAAAACGTAGCCTTGATGATTCATTTGTTTCATAATTTGAGATCGAACTTTTTACTTCAATCTATTACGTTGCAAGCGACATTATGCTAATAAAGAATGAAACAAGTTTTAACCTTTGACTGACTCTTCCAAGCAGCGAGTGATGTCTAGAGAAATATTGTACAGTCCAAGTAATATCCTCAGAGTTCAAGTTTGTAAATTCTTAATTTTCATTGTATTTAATCTCAGTCCAGATCTTTAGCGCCTTGCTATTTGATACCATAATATCCATGTACAATCCAATCCAAATCAATATTTGTCTAGTTTCCAAATTCAATATGTGTGGATCTACGCTGCAAATACGAATAAATATTGATTTTGACAAGGACTATGGGGATGCTGGCATGTTATAATTGGCACCTCACCTTTAGGATTAGCGTATACACTGCAATACACAAAACCTGTTTCCACTTCATGGATATGAATGTCATGGTGTTGTTCCACTTTCCACGTTCATGGACATGAATGTCATGGTGTCACTCAAGCTAACAAAAAAAAATTTCATAGCATTTTAAGTCTAAACTGAGCAAGTTGAAGCTACATTCCAGAAGAGTACGCAAATGAAAACCTCTTTTATCATGATTTTAGTAATCTTTCACCATCGTGTTCATTGCTAACTTGCCTTCAACTATTTCTGTTGGATTGTAATAGTAAAAGAATGTGTACAAAAAGAATACTGGTTTTGTACCTGACTTGAAAAATTATCGTGATTCCGTTCTTTACTAATTTTATCTAAAACCTTCTAGAACATTCTTCTTTTTGCCATGATCATTCAAAATTCTCATAAACTATCTATGGAAGTAGATTCTTTTGTTTTGATACTATCTTTTGGATTTCCTGCCGAACCATAACTCGGTAATTTAAGCGTCCACATTATATTCTAATGAGAAAATATCCCTAGTTTCCTCTATGAGTGAAATTTGTGTTTAAAGCCACAACTTTCTGAAGTATTTTTCAGGAAGTATACAAAGTCATGTAGAATAACGACAGAGCTTGGCAACATTATAAGGTCGATTGTTCATGAAGTAACTTTTAGTCAACTGTGTCTCAATTAGTAAGTTCATCAACAATATTTTTCCCAACCCCATCAATTGATATATTATATTCTTCTTTGTACCGTGACGGTGCATTTATCACAACATTATAGTGCTCCTATGAGAATTATTCTATTGCACTCATTAACAAATCCAATAGAAGACTAAGGATAAAACATTTTGAAGATTTACACATGAGTTGGGTAAGAAAAATGTATGCAGAGTACAATTTTTATGCAACATCTAGAACTAAGTTGGCCCGATTTCTAAATTCCTGTCAGGTCTTCCAGTGAGCATTTTGCTGTTGTATGATGCATTTTTGAATTTAGACTTGGCTGCTCATCATGTATGTTTAAGGTTAATTCCATTTACTTCAGAAGTCCAGATAATTTGTAATTACATAAACATTCCATTGGGTTGCTTGTAGGGAACACATCTTTAATAATAGTTGTAATAGCTTTGATGTCACACTTTTTTGGTATCAACGTGATCTACCAAAAATGTCCCTCTATATGTTAGCAAATCTTAATAACTTAAAAATAGAATCTAATTTTAAACTTCTTTTACAAATTCAAACGCCCCTAAAAATAGGATCTAACAATGAATATGAATTCAAAACACTTCTAAAAATAGTATCTAAAATTAAACTTTCTTCATAAATTTAGAATACTTCTTTACAAATACACAATTCTTAATATCACTTGAAAATAAAAAAATCATTTTTTATTTACCGATTTATACATATACAATTTTATCTTTCTTTAATAATAGTTGTAATAGCTTTGGTGTCACACTTTTTTTGGTATCAACCGAACTACCAAAAATGCCCCTTTATATGTTAGCAAAATCTTAATAACTTAAAAATATAATCTAATTTTAAACTTCTTTTACAAATCCAAACGCCCCTAAAAATAGGATCTAAACAATGAATATGAATTCAAAACACGTCTAACAATAGTATCTAAAATTAAATTTTATTCATAAATTTAGAATACTTCTTTACAAATACACAATTCTTAATATCACTTGAAAATAAAAAAATCATTTTCTTTACCGATTTATACATATACAATTTTTTTCTTTTCTTTCTTTAATAATAGTTGTAATAGCTTTGGTGTCACACTTTTTTGGTATCAACGTGAACTACCAAAAAATGCCCCTCTATATATTATCTAATCTTAATTACTTAAAAATAGGATTTAATACTAAATTTCTTTTACAAATTCAAATGCCCATAAAAGTAGTATCTAATAACTAAAGAAGCTTTAAATTCAAAACGTTTCTAAAAAATAGGATGTAAAATTAAACCTTTTTTTATAGATTCAAAATACTTCTTTACAAAAATCACTTGAAAATAAAAATTATTTTTTTGACTGATTTAAACGCATATAATTTATAAAAAAACAATTCACGCACGAAGTGCGTGCCGTTACACTCGTTAATAATAGTTGTAATAGCGTTGGTGTCACACTTTTTTTGGTATCAACGTAAACTACCAAAAATGCCCCTCTATATGTTAGCAAATCTTAATAACTTAAAAATAGAATCTAATTTTAAACTTCTTTTACAAATCCAAACGCCCCTAAAAATAGGATCTAACAATGAATATGAATTCAAAACACTTCTAAAAATAGTATCTAAAATTAAACTTCATTCATAAATTTAGAATACTTCTTTACAAATACACAATGATTAATATCACTTGAAAATAAAAAATCATTTTTTTACCGATTTACACATATATAATTTTATAAGGAAAATAATTCACGCGCGAAGCGCGTGCCGTGACACTCGTAAATATTATGCAATTGTAAATCTTACTACCATATTAATGCAGACGGAATACATTGGAGAAGAAATTGGCTGATGCAGATGTGTCGGAGGAGGAGCAGAATAATATTCTTAAGCATTTAGAGAGAAAAGAAACTGAATACATGCGCATTCAAAGGCATAAGATGGGGGTGGATGATTTTGAATTGCTAACTATGATTGGAAAAGGGGCATTTGGTGAGGTATATAAATATGGAAACTTCTAATCATTACCGTGAACCATTTCTGGAATAGCTTTTGAATCAGAGAATATAGTAGAGCCATGAACAAGGATAAGCCTATTGCTGTTGTCTTTAATTAACTTTAAATCTGTAATGCAGGTTAGGATATGTAGAGAAAAGACTACTGGTAATGTTTACGCAATGAAGAAACTTAAGAAATCAGAAATGTTACGTAGGGGTCAGGTTGAACATGTTAGAGCCGAAAGAAATCTACTTGCCGAAGTTGATAGCACATGCATTGTGAAGCTTTACTGTTCTTTTCAAGATAATGAGTTTTTGTATCTTATTATGGAGTATTTACCTGGTGGGGATATGATGACATTGCTTATGCGAAAGGATACATTAACTGAGGAAGAAGCCAGATTCTACATCGGAGAGTCAGTTCTAGCCATTGAATCTATACACAAACACAATTACATTCATAGGTATGTTAAGGTCATTGGATTGATATTCTTCTATTGTTTTATTCATTGCCATTTATACGTTGTGCTTATGTGATGGTGCAGAGACATCAAGCCAGATAATCTATTACTTGATAGATATGGGCATCTAAAGCTATCTGATTTTGGATTATGCAAGCCATTAGAGTACAGTAACTTTCCAAACCTGAATGAAGCTCAAGGTAAGAATTGTAGTGGGGCTCTACAATATGATGGGAAACCAGCTGCACCAAAGCGCTCACAGCAGGAACAGCTGCAACATTGGCAAAAGAATAGGAGAACATTGGTATGGATCATTTTATAACAGTTTCCCATTGAAATTGATTGTGCATCTCCTAATATTATATTATATTTCGTATTATGTTTTGACATATCTTGTTATGTTGATGAATATTCACCCTTTATTAATCAGTAGTTTCATACTGATCAAGCTATGATTCAGCTTTAAGCTTATCTTCTTATCTAACTTGCCTCTTGAAAATTACAAGGCCTACAGTACAGTTGGTACGCCTGACTATATTGCTCCGGAAGTCTTATTGAAGAAAGGTTATGGAATGGAATGTGACTGGTAAGTGTCTTTTCCTCTTCTAGCATTCTCGTCATAATTTTATACATATGAGTAGTATAACTTCTTTTTCTATAATAGGTGGTCATTAGGTGCTATTATGTATGAAATGCTTGTGGGTTATCCTCCATTTTATTCTGATGAACCAATGACAACATGTCGTAAGGTAAAACAATTCCTTGTTCTGTTAACATATAGGATACTAAGATCATCTGATTATACACTAAATATGATTGATATATTGATCATTGTTTACCATGCATTTAAGTCATAAATTTATAATGTAGTATCACCTTATAAAAAAAAGAAAAAAAGAAAAAAAAAGCTAAGGCTGTGTCAGAAAAACTCTAGCTACTTAACTCTTTTTGTAATTAAAACCTCAAGCATTAACTGTTATCTTATCAGCGCAGATAGTGAACTGGAGAACACATTTAAAATTTCCTGAAGAAGCTAAGTTATCTCCAGAAGCTAAAGATCTTATAAGTAAACTTTTATGCAATGTAGATCAAAGGCTAGGGACAAATGGTGCTGATGAAATTAAGGTCTTCACATACCGATATCTGAATGAAAATTGATTTAAAATTTGTTTTAAAAAAGTCATTGTTTTTCTTGGCTGGTCATATGCAGGAGCATCCCTGGTTTAAAGGTGTTGAATGGGATAAATTATATGAAATGGAGGCTGCATTTATACCAGAGGTCACGGATGAGCTGGATACTCAGAATTTTGAAAAGTTTGATGAGGTATTGTATGATCAATGAAGCGGTTTAAGAACAAGTGATACGCTATATTACTAAGTTTTAAGGTATAATGTTTTATGATTACAGACTGACAACCAGATTCAAACTTCCTCAAAATCCGGCCCTTGGAGAAAGGTGAATTTTCTTGTAATATTTGGATTATTGACATAAAAAAGCTTTAAACAAGTCAATTATGATTTATTATTAAACTGACGGCTACATAGTATTAACTATACTGTTTTTGCACTAGCTTTCTTGCTACCTACTTTCCTTTTCATTTTCAGTCTATCATTACCATGTACATAGTATCTGTTAAAGTAATACATGAGCTGCTATTTGATCTTTGAAATTAAGCCCACAACATTCAAACAGAACAATCTTAAAATTTATATGAATGTTATGTTCTACCTTGAGTTGCTATTGTAAACATACCTTTGTTGTATTAATTGTGACAGATTCTTGTTGTTGTTGTTAGTCCAATGCATGACATGTTTTTTCTTCTTTTGCTTATCCCCTATCCAGATGCTTTCTTCCAAAGATATAAACTTTGTGGGTTACACATATAAGAACTTTGAAATTGTCAATGATCATGAAGTGGATGGGTTAGGTATGGAATTTTACCAGCGTATTTTTCTGTTACTTTTTCAAAGCTCGTATTAAAATAAAGTAATGATCCCACAGCTGAGTTGAAGAAGACAAGCACCAAAGCTAAAAGGCCGTCTATCAAGTCTTTATTTGGTATATCTTTTTATTGTTTGATATGCACTCAATCCACTGCATTTATATCAAAGACCAAATTTTTTTGATCAGGGACTAATATTCTTTGTTTCATTGTATGTTCAGAATCTTCGGATGCCGATGGCCAAAATCCATCTGACGAGCCTTCTGATGTACAACCGTCTGATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247808.1	8.9e-249	serine/threonine-protein kinase tricorner-like
Swissprot	Q2LZZ7.1	2.4e-118	Serine/threonine-protein kinase 38-like
trEMBL	A0A5P1E403	6.4e-249	Serine/threonine-protein kinase tricorner-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G23310.1	76.25	0.0	828		AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g405806	AT3G23310.1	522	118	2	1	516	1	522	76.25	828
g405806	AT4G14350.2	483	92	0	36	518	39	521	80.95	827
g405806	AT4G14350.1	483	92	0	36	518	39	521	80.95	827

Ortholog group

Species	Genes
Allium cepa	g217483.t1; g309728.t1; g404442.t1; g405806.t1
Allium fistulosum	AfisC1G02411; AfisC3G04057; AfisC5G06871; AfisC6G00995
Allium sativum	Asa0G05451.1; Asa0G05452.1; Asa7G05041.1; Asa8G05326.1
Arabidopsis thaliana	AT1G03920.1; AT1G30640.1; AT2G20470.1; AT3G23310.1; AT4G14350.1; AT4G14350.2; AT4G14350.3
Oryza sativa	LOC_Os05g43570.1; LOC_Os05g43570.2; LOC_Os05g43570.3; LOC_Os10g33640.1; LOC_Os12g19290.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	117	415	220.5	2.2e-65
PF00433.21	Pkinase_C	Family	434	478	27.7	2.9e-06

Gene Ontology

Accession	Ontology	Name
GO:0000166	F	nucleotide binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005488	F	binding
GO:0005524	F	ATP binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007275	P	multicellular organism development
GO:0007399	P	nervous system development
GO:0008144	F	drug binding
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0010975	P	regulation of neuron projection development
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0017076	F	purine nucleotide binding
GO:0019538	P	protein metabolic process
GO:0022008	P	neurogenesis
GO:0023052	P	signaling
GO:0030154	P	cell differentiation
GO:0030554	F	adenyl nucleotide binding
GO:0031344	P	regulation of cell projection organization
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032553	F	ribonucleotide binding
GO:0032555	F	purine ribonucleotide binding
GO:0032559	F	adenyl ribonucleotide binding
GO:0035639	F	purine ribonucleoside triphosphate binding
GO:0036094	F	small molecule binding
GO:0036211	P	protein modification process
GO:0043167	F	ion binding
GO:0043168	F	anion binding
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045595	P	regulation of cell differentiation
GO:0045664	P	regulation of neuron differentiation
GO:0048699	P	generation of neurons
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050767	P	regulation of neurogenesis
GO:0050773	P	regulation of dendrite development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051128	P	regulation of cellular component organization
GO:0051239	P	regulation of multicellular organismal process
GO:0051716	P	cellular response to stimulus
GO:0051960	P	regulation of nervous system development
GO:0060284	P	regulation of cell development
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0097367	F	carbohydrate derivative binding
GO:1901265	F	nucleoside phosphate binding
GO:1901363	F	heterocyclic compound binding
GO:1901564	P	organonitrogen compound metabolic process
GO:2000026	P	regulation of multicellular organismal development
GO:0120035
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08790	STK38, NDR; serine/threonine kinase 38	EC:2.7.11.1	-	-
K20069	NECAP1_2; adaptin ear-binding coat-associated protein 1/2	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network