result

Gene information

Detail information of g408664

Location

Gene	Chr	Start	End	Strand
g408664	Scaffold_77779:HRSCAF_460865	96159	97377	-

Sequences

CDS

Protein

Gene

>g408664.t1
ATGGATAGTATATCGGAGATAATGAGTTTGAACTTTTTAGAGTCTGCAACGCAAGTGGAAGAGTCTGAATTACTCAACCAGATGCTTTTATCGAATGATCAATCTCTGTTTTTCTCTGGTTCCCATTATTTTAGTTCTCAAGAAGCTAATTCAAACTTATGGTATTTTTCTCGAGAGAGCTATAGTGCTATTGATGCTAGTAGCTTTTTCGATCCACTTGATAGCTATCAAGTACTGGACACTTGTGTTTCAGACAAGAATGTCGAGGAATGCACGAGCTCGTATGATCTATTTGATGTTTTTGATCCGCAACTACGACCGAAAAGAAAAGTTTGCATTGATGAAGTTGAAAAGGCTACTGAAGAAAATAACAGCATTTGTACTTCCATGACTGATGTTAAAAAGAAAGCAAAGGTTGAAGTAAAAGTAAGTTCATTTTTACTCTTGTATACTGTTCAGTTTTCCCAATTGACTTTTTTTTTTTGTGTTTGTCCGATATCATGACATTGTGTTAATGCAGGACAAGAAGAACGTAGATATTGCACCAAATATTCGAAGCTCCAGTTCTTCCATTTCTGAAGTTGAATTGGACAACGATTCTAAAGAAGACATGATATCAAATGCTCTTAACTTGAATGTGCGCAAAAGAACTAGCAGAGCTTCAGCAATTGATCCACAAAACCTATACTCAAAGGTATGCAATTTAATTACTATACAACATAATTTACATCTACTCTGTGTTATATGAACATGTAATGTAAATTTGTGTGTGGAGGCTTATAAGTTATTGCGTACAGAGAAGAAGAGCAAGAATCAACGAGCGACTGAGAATACTGCAGAATCTAGTTCCTAATGGAACAAAAGTAAGTGTTTCTTTAACTTTCTTGAATCAGTTTTAGCTTGTATGTTTAGAGAATATCATATTGAGGGTACAATTGCCGGAATGACATTTATTGTTTGCATGGTGCAGGTAGATATTAGCACAATGTTGGAAGAAGCAGTTCAGTATGTTAAGTTCTTACAGCTCCAAATTAAGGTATAAACTAATTTTGTTCCTTTCATTTGGATTATATCCTGGGGAAAAAACAGTTAAATGTATATATTAATTTGAATGTAGGTGTTAAGCTCTGATGATAAGTGGATGTATGCACCCTTGGCTTACAATGGCATCAACATTGGACTTGATTTGAATAGAGATCTTCCATGGCGTCAACAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	KAF5194547.1	3.1e-35	Transcription factor bhlh
Swissprot	Q7XHI9.1	2.3e-35	bHLH transcription factor bHLH084
trEMBL	A0A2G5DL19	2.2e-35	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G14760.1	78.22	1e-41	167		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g408664	AT2G14760.1	101	21	1	169	268	221	321	78.22	1e-41	167
g408664	AT4G33880.1	101	24	0	166	266	248	348	76.24	1e-41	166
g408664	AT2G14760.3	114	21	2	169	268	221	334	69.30	6e-39	157

Ortholog group

Species	Genes
Allium cepa	g134668.t1; g242803.t1; g255117.t1; g408662.t1; g408664.t1
Allium fistulosum	AfisC8G04897
Allium sativum	Asa6G05078.1
Arabidopsis thaliana	AT1G27740.1; AT2G14760.1; AT2G14760.2; AT2G14760.3; AT4G33880.1; AT5G43175.1
Oryza sativa	LOC_Os03g10770.1; LOC_Os03g42100.1; LOC_Os07g39940.1; LOC_Os11g41640.1; LOC_Os12g39850.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	200	240	32.4	5.9e-08

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000902	P	cell morphogenesis
GO:0000904	P	cell morphogenesis involved in differentiation
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001047	F	core promoter binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009058	P	biosynthetic process
GO:0009059	P	macromolecule biosynthetic process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0010015	P	root morphogenesis
GO:0010033	P	response to organic substance
GO:0010053	P	root epidermal cell differentiation
GO:0010054	P	trichoblast differentiation
GO:0010467	P	gene expression
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0016043	P	cellular component organization
GO:0016070	P	RNA metabolic process
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0018130	P	heterocycle biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019438	P	aromatic compound biosynthetic process
GO:0021700	P	developmental maturation
GO:0022622	P	root system development
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032774	P	RNA biosynthetic process
GO:0032989	P	cellular component morphogenesis
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0034654	P	nucleobase-containing compound biosynthetic process
GO:0042221	P	response to chemical
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044271	P	cellular nitrogen compound biosynthetic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0046483	P	heterocycle metabolic process
GO:0048364	P	root development
GO:0048468	P	cell development
GO:0048469	P	cell maturation
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048731	P	system development
GO:0048764	P	trichoblast maturation
GO:0048765	P	root hair cell differentiation
GO:0048766	P	root hair initiation
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071695	P	anatomical structure maturation
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0090304	P	nucleic acid metabolic process
GO:0090558	P	plant epidermis development
GO:0090627	P	plant epidermal cell differentiation
GO:0097159	F	organic cyclic compound binding
GO:0097659	P	nucleic acid-templated transcription
GO:0099402	P	plant organ development
GO:1901360	P	organic cyclic compound metabolic process
GO:1901362	P	organic cyclic compound biosynthetic process
GO:1901363	F	heterocyclic compound binding
GO:1901576	P	organic substance biosynthetic process
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:1990837	F	sequence-specific double-stranded DNA binding
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network