result

Gene information

Detail information of g420178


Location
GeneChrStartEndStrand
g420178Scaffold_79146:HRSCAF_462232254320261110+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010936285.11.9e-289ATP-dependent DNA helicase DDM1 isoform X2
SwissprotQ9XFH4.13.7e-245SWI/SNF2-related matrix-associated actin-dependent regulator of chromatin DDM1
trEMBLA0A6I9S1M11.4e-289ATP-dependent DNA helicase DDM1 isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G66750.159.220.0 897ATDDM1;CHA1;CHR01;CHR1;DDM1;SOM1;SOM4chromatin remodeling 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag303421.t1; g420178.t1
Allium fistulosumAfisC2G05935; AfisC5G05958
Allium sativumAsa0G02421.1; Asa1G04574.1; Asa4G05535.1
Arabidopsis thalianaAT5G66750.1
Oryza sativaLOC_Os03g51230.1; LOC_Os03g51230.2; LOC_Os09g27060.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily205502223.43e-66
PF00271.28Helicase_CFamily52863868.35.8e-19

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000785Cchromatin
GO:0000786Cnucleosome
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003678FDNA helicase activity
GO:0042623FATPase activity, coupled
GO:0003824Fcatalytic activity
GO:0004003FATP-dependent DNA helicase activity
GO:0017111Fnucleoside-triphosphatase activity
GO:0004386Fhelicase activity
GO:0005623Ccell
GO:0005694Cchromosome
GO:0006139Pnucleobase-containing compound metabolic process
GO:0016887FATPase activity
GO:0006259PDNA metabolic process
GO:0006325Pchromatin organization
GO:0006342Pchromatin silencing
GO:0006344Pmaintenance of chromatin silencing
GO:0006346Pmethylation-dependent chromatin silencing
GO:0006349Pregulation of gene expression by genetic imprinting
GO:0006355Pregulation of transcription, DNA-templated
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0008026FATP-dependent helicase activity
GO:0008094FDNA-dependent ATPase activity
GO:0008150Pbiological_process
GO:0009292Pgenetic transfer
GO:0009294PDNA mediated transformation
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0010638Ppositive regulation of organelle organization
GO:0010639Pnegative regulation of organelle organization
GO:0016043Pcellular component organization
GO:0016458Pgene silencing
GO:0016462Fpyrophosphatase activity
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0016569Pcovalent chromatin modification
GO:0016787Fhydrolase activity
GO:0016817Fhydrolase activity, acting on acid anhydrides
GO:0016818Fhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031056Pregulation of histone modification
GO:0031057Pnegative regulation of histone modification
GO:0031058Ppositive regulation of histone modification
GO:0031060Pregulation of histone methylation
GO:0031062Ppositive regulation of histone methylation
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031399Pregulation of protein modification process
GO:0031400Pnegative regulation of protein modification process
GO:0031401Ppositive regulation of protein modification process
GO:0032196Ptransposition
GO:0032197Ptransposition, RNA-mediated
GO:0032268Pregulation of cellular protein metabolic process
GO:0032269Pnegative regulation of cellular protein metabolic process
GO:0032270Ppositive regulation of cellular protein metabolic process
GO:0032392PDNA geometric change
GO:0032508PDNA duplex unwinding
GO:0032991Cmacromolecular complex
GO:0032993Cprotein-DNA complex
GO:0033043Pregulation of organelle organization
GO:0033044Pregulation of chromosome organization
GO:0034641Pcellular nitrogen compound metabolic process
GO:0035065Pregulation of histone acetylation
GO:0035067Pnegative regulation of histone acetylation
GO:0040029Pregulation of gene expression, epigenetic
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043412Pmacromolecule modification
GO:0044030Pregulation of DNA methylation
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0044764Pmulti-organism cellular process
GO:0044815CDNA packaging complex
GO:0045814Pnegative regulation of gene expression, epigenetic
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046483Pheterocycle metabolic process
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051052Pregulation of DNA metabolic process
GO:0051128Pregulation of cellular component organization
GO:0051129Pnegative regulation of cellular component organization
GO:0051130Ppositive regulation of cellular component organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051246Pregulation of protein metabolic process
GO:0051247Ppositive regulation of protein metabolic process
GO:0051248Pnegative regulation of protein metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051570Pregulation of histone H3-K9 methylation
GO:0051574Ppositive regulation of histone H3-K9 methylation
GO:0051704Pmulti-organism process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070035Fpurine NTP-dependent helicase activity
GO:0071103PDNA conformation change
GO:0071514Pgenetic imprinting
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090239Pregulation of histone H4 acetylation
GO:0090241Pnegative regulation of histone H4 acetylation
GO:0090304Pnucleic acid metabolic process
GO:1901360Porganic cyclic compound metabolic process
GO:1901983Pregulation of protein acetylation
GO:1901984Pnegative regulation of protein acetylation
GO:1902275Pregulation of chromatin organization
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1905268Pnegative regulation of chromatin organization
GO:1905269Ppositive regulation of chromatin organization
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2000756Pregulation of peptidyl-lysine acetylation
GO:2000757Pnegative regulation of peptidyl-lysine acetylation
GO:2001141Pregulation of RNA biosynthetic process
GO:2001251Pnegative regulation of chromosome organization
GO:2001252Ppositive regulation of chromosome organization
GO:0140097

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K19001HELLS, DDM1; ATP-dependent DNA helicaseEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.