result

Gene information

Detail information of g422816

Location

Gene	Chr	Start	End	Strand
g422816	Scaffold_79442:HRSCAF_462528	1621036	1624952	+

Sequences

CDS

>g422816.t1
ATGAATTCCAATCCCACCGACGTCAGCCAACGAACTTGCAGCCGTCTCGGCTGCCGCCCTCCGCAGCCACAGAAACAACCCGTCATCATCAACATAGATTCTGACAGTGAAGAAGAAAACCAAAAAAACGCAATTTCAGATCCGAAGGACGCAAATTGTAAAGTTGAGTCCGAAGAAATTCATGAAAACCGTACAGGTAATGATGATATTAACCTGGTTCCGGAATCAAGCCCTTCTGAAAGTTTTACTGATTCTGTTGAAGAATTACATGAAGAAGATGATAAATGTTGCACCTTTTCGGAAGTATCCAGCTGTGAAAACAGGGACGAGAGGTTGGTGAAGAAGAAGAGGCTCGGTTTAGAAGTTCTTCTGTCTGCTTCCAAGGAACAAGTGAAAAGTGAAATTCGGAAAATTACACCTGAAAGCAGTAACATTTTTCTCAGAACCCGTTCACGTACTATAGCTAATATTCCGGAAAAGTGGAAAAATTTGGGTAGCCTAAGCAACCCGTATTGTGTAGATGAGGAGGATGAGGTAGATTATAGTTCCCAGTCTAATGATGAGAAAGGAAATAGAGAGGATGACAGAGGAATATATAAATTGCGTAAGAGAAAAAGCAAAGCAAAAGTTGGGGTGAATCGAAGGGTTAAATTTAAAAAAAGAAACAGGGTTGATGAAAAAACGTTGGAGGCCGAAATTCTTAAAATTCTAGCAGATAATAACTGGTGCGATGATACAAATTGTCCGGAGAATTCAGTTGACGATGACCGTAGTAAAAGCGAAAAGCTTTCACTTCCTTTGATTTTTTCTTTCGGAGATGACGAATCTGAAGTTGTAGAGAAATCGGAGCATGAAAAAGAAATTGATGAATTGTGGGCTGATTTTGATTTCGCTATGGAAGCATGCAACATTGGATCTTACAATGATGATGAGAGTCAATCCGAAGACATAAATGAACCAGAATTCGAATCTGATCAATCCTTTTTGTGCCCTAAAGGCACACATCAATTAACTCTAGATGAGCAAATTGGGATCAAATGCACGCGTTGCTCCTACCTCCACATGGATATTAAACACATACTTCCACCTTGGGCTTCTTCCACCAATGAAGGATTTACTCATTACACAGACCACCACAACGAGGACTCGTCATTTTTTGAAGACTTAATCAATGATGAAAAACTCGAAACAAGTCAAAATTCACATATATACTCCAAAAACAGTACAAGTACTGTATGGGATCTTATACCTGGAACACGCGATGATCTCTTCCCACACCAAGTAGAAGCTTTCGAGTTCATCTGGAATAATCTAGCAGGAACCATTCACATAAAGGACTTGAGATCAAACATCAATTCTGAAAAAAATGGTGGATGTGTTATATCACATGCACCAGGCACTGGAAAGACAAGACTATCCGTTGTTTTCATCCAATCATACATAAAATTCTTCCCAAATTCCAGACCCGTTGTGGTAACCCCAAGCGGTTTGATCCAGACATGGAAGAATGAGTTCGAAAAATGGGGTTCAAATGTCAAAGTTCACGACTTGAACGAGGATAAAGAACACGCTGCTGCTCAACAAAATGACGGTTTCGCCCCCAACATTCAAGATGCACGCCTCCTGAAACTCCTATCATGGAAAATGGGCAGTAGCGTAGTTTTAATAAGCTACACACTGTTACAAAGATGCTCAGAGTTAAGTAAAATCATTCTAGAAAAGGCAAGCTTGGTTGTTTTCGACGAGGGGCACACTCCTAGAAACGATCAGAGCTGCATTTGGAAAACTCTTAAGCAGCTGAAGACTTTGAATAGAGTCTTACTTTCTGGAACTCCTTTTCAGAACAATTTCACTGAACTTTACAACACTTTGTGCTTGGTGAGGCCTAAATTTAATGAAAAATTGTCAACCTTGGCAAATAATAGTGCAAAATCCAAATGGGAAGAACTAACAAGAAGTGGTTACACTTACGATAATGATATGAAGCTCAGCATAGAAGAGGTTAAGTCTACTATCAGCCCATTTGTGCATGTTCACAGCAACGAAATCCTCGATAGAACCCTCCCTGGTTTAAGTAAATGTGTAGTTGTACTCAACCCATGCAAATTACAAAAGACCATGCTCGAAAAAATAAAGGGTTTGAAGCGCAAATTCTGGCTTGAAAATGACTATAGAAACTCTTTGATTTCGATACATCCTTCTTTAGCCATGACTTTCTTGTCAGAAGAAGAGAAGCTACACTACAACTCCGATATGTTAGAAGAAGTTAGATTAAACCCCGACAAAGGCTCGAAAACCAAATTCGTGATCGAACTCATTCGACTATGCGAAGCACTGAAAGAGAAAGTGATAGTCTTTTGTCAAAATCTAGAGCCATTAGACTTGTTAGAAGAGCAGTTAAGGAAGTTATTCTCTTGGAATGATGGTAAAGAAATACTAAGAATGCATGGAAAAATTCCAGTGAAAAATAGACAGTCTTTGATCGATGATTTCAACGATGATATGAGTAAATCGAGAATTATGTTAGCATCAACTAAAGCATGCTCAGAAGGAATAAGCCTTGTAGGTGGTTCTAGAGTTGTTTTACTCGATATATTGTGGAACCCTTCTGTAAGGAATCAAGCTATAAGTCGAGCATATAGGATTGGGCAGAAGAGGTTTGTGTATGTGTATCAGTTGGTAAGTGATGGAATGGAAGAGAAATATAGGTATAATGTGCAAGCTGCTAAGGAGAAACTATCGGAAATGGTGCTTTCGAAGAAGAACGATGGTGGGAAACCGTGTGAGAATGACATGGTTTTGGAGGAGATGACGAGGAATGATAAGGTTAAGGATGATTTTTGCAAGATATGCTACTTGACCGATGAAAATAGTAATGCATTTGCTTAA

Protein

Gene

>g422816.t1
ATGAATTCCAATCCCACCGACGTCAGCCAACGAACTTGCAGCCGTCTCGGCTGCCGCCCTCCGCAGCCACAGAAACAACCCGTCATCATCAACATAGATTCTGACAGTGAAGAAGAAAACCAAAAAAACGCAATTTCAGATCCGAAGGACGCAAATTGTAAAGTTGAGTCCGAAGAAATTCATGAAAACCGTACAGGTAATGATGATATTAACCTGGTTCCGGAATCAAGCCCTTCTGAAAGTTTTACTGATTCTGTTGAAGAATTACATGAAGAAGATGATAAATGTTGCACCTTTTCGGAAGTATCCAGCTGTGAAAACAGGGACGAGAGGTTGGTGAAGAAGAAGAGGCTCGGTTTAGAAGTTCTTCTGTCTGCTTCCAAGGAACAAGTGAAAAGTGAAATTCGGAAAATTACACCTGAAAGCAGTAACATTTTTCTCAGAACCCGTTCACGTACTATAGCTAATATTCCGGAAAAGTGGAAAAATTTGGGTAGCCTAAGCAACCCGTATTGTGTAGATGAGGAGGATGAGGTAGATTATAGTTCCCAGTCTAATGATGAGAAAGGAAATAGAGAGGATGACAGAGGAATATATAAATTGCGTAAGAGAAAAAGCAAAGCAAAAGTTGGGGTGAATCGAAGGGTTAAATTTAAAAAAAGAAACAGGGTTGATGAAAAAACGTTGGAGGCCGAAATTCTTAAAATTCTAGCAGATAATAACTGGTGCGATGATACAAATTGTCCGGAGAATTCAGTTGACGATGACCGTAGTAAAAGCGAAAAGCTTTCACTTCCTTTGATTTTTTCTTTCGGAGATGACGAATCTGAAGTTGTAGAGAAATCGGAGCATGAAAAAGAAATTGATGAATTGTGGGCTGATTTTGATTTCGCTATGGAAGCATGCAACATTGGATCTTACAATGATGATGAGGTATCTTGAATTCGTTAATGCCAAAATTTAACAAATTTTATGAATTTAATTTGATCTCTCGTCTTTCCCATGTTTGTTAATTTTTACAAGTCGCATTTATTATGTACAGTTATTAATGTAGGCAAATGTTGAAAATGTTACTAGTTATGTAATAAATTGGATATTAATTATTATTGAATGCAAAATGAACTTTGCCAAATATTCCGTAAACAATATTTTTCCTATGTTTATTAATTTTGATATACAATGTCAATGAATATAATTGTCAATCAAGACTATATTTGAAACAAGCTCTTGTTACTAAAGAAATATGGGGGAAAGAAGGAAGATACGATGAATATGCAAAAGGTATCATTATTTAATATCTATGATCCTTATGCATCAGTGGTTTAAATGCTTCTTAATTAAATGAATAAACATTATGTAACATTCAGTTTTCAACAGAAGTATAATATGCATGTCCAATTTTCCTATTGCAAACTCTGGTGTTTTCTTTGTCAACAATCCCAGCTTTCACACTCATTACAACTTCTGTCAAAGTTGAAAGCTTGAATTATCTACGTCGCTCTAATGATGCTTATGCAATTTTTACAACACATATGGAAATTAAACTATTCGGTACATGCATTTGGCAGTAATTAGAATGCTTTAGAAGTTAGGACAATGTTCAGTAGCTACAAAGCTGATCTTATCCGCCATTTCAATCAATCTGTAGTAGTTATAAATTGTTCTGAAGGGGTATTTATGTACTTTAAAAGCTTCACCTAACTGTTTGCTTTATATTAAAAGATGCAGCAAACCTAAGTTTCTTTACTCTGTATTTGTTTCATTTTAATATATGCACCGCACCATATACCAAATTCAATATATTTCAAGATTAGGAAATATATATACTTAACATGTTGTTCATCTTCTCAACATTTTACTATGCTATACAGAGTCAATCCGAAGACATAAATGAACCAGAATTCGAATCTGATCAATCCTTTTTGTGCCCTAAAGGCACACATCAATTAACTCTAGATGAGCAAATTGGGATCAAATGCACGCGTTGCTCCTACCTCCACATGGATATTAAACACATACTTCCACCTTGGGTATATACTTCTTTCAAATTCAATTTTTTTTAAAGAAAAAAAAAAAACCTGTTATCTTTACTCTAATTATGATTTTTCCTAATTTGACAGGCTTCTTCCACCAATGAAGGATTTACTCATTACACAGACCACCACAACGAGGACTCGTCATTTTTTGAAGACTTAATCAATGATGAAAAACTCGAAACAAGTCAAAATTCACATATATACTCCAAAAACAGTACAAGTACTGTATGGGATCTTATACCTGGAACACGCGATGATCTCTTCCCACACCAAGTAGAAGCTTTCGAGTTCATCTGGAATAATCTAGCAGGAACCATTCACATAAAGGACTTGAGATCAAACATCAATTCTGAAAAAAATGGTGGATGTGTTATATCACATGCACCAGGCACTGGAAAGACAAGACTATCCGTTGTTTTCATCCAATCATACATAAAATTCTTCCCAAATTCCAGACCCGTTGTGGTAACCCCAAGCGGTTTGATCCAGACATGGAAGAATGAGTTCGAAAAATGGGGTTCAAATGTCAAAGTTCACGACTTGAACGAGGATAAAGAACACGCTGCTGCTCAACAAAATGACGGTTTCGCCCCCAACATTCAAGATGCACGCCTCCTGAAACTCCTATCATGGAAAATGGGCAGTAGCGTAGTTTTAATAAGCTACACACTGTTACAAAGATGCTCAGAGTTAAGTAAAATCATTCTAGAAAAGGCAAGCTTGGTTGTTTTCGACGAGGGGCACACTCCTAGAAACGATCAGAGCTGCATTTGGAAAACTCTTAAGCAGCTGAAGACTTTGAATAGAGTCTTACTTTCTGGAACTCCTTTTCAGAACAATTTCACTGAACTTTACAACACTTTGTGCTTGGTGAGGCCTAAATTTAATGAAAAATTGTCAACCTTGGCAAATAATAGTGCAAAATCCAAATGGGAAGAACTAACAAGAAGTGGTTACACTTACGATAATGATATGAAGCTCAGCATAGAAGAGGTTAAGTCTACTATCAGCCCATTTGTGCATGTTCACAGCAACGAAATCCTCGATAGAACCCTCCCTGGTTTAAGTAAATGTGTAGTTGTACTCAACCCATGCAAATTACAAAAGACCATGCTCGAAAAAATAAAGGGTTTGAAGCGCAAATTCTGGCTTGAAAATGACTATAGAAACTCTTTGATTTCGATACATCCTTCTTTAGCCATGACTTTCTTGTCAGAAGAAGAGAAGCTACACTACAACTCCGATATGTTAGAAGAAGTTAGATTAAACCCCGACAAAGGCTCGAAAACCAAATTCGTGATCGAACTCATTCGACTATGCGAAGCACTGAAAGAGAAAGTGATAGTCTTTTGTCAAAATCTAGAGCCATTAGACTTGTTAGAAGAGCAGTTAAGGAAGTTATTCTCTTGGAATGATGGTAAAGAAATACTAAGAATGCATGGAAAAATTCCAGTGAAAAATAGACAGTCTTTGATCGATGATTTCAACGATGATATGAGTAAATCGAGAATTATGTTAGCATCAACTAAAGCATGCTCAGAAGGAATAAGCCTTGTAGGTGGTTCTAGAGTTGTTTTACTCGATATATTGTGGAACCCTTCTGTAAGGAATCAAGCTATAAGTCGAGCATATAGGATTGGGCAGAAGAGGTTTGTGTATGTGTATCAGTTGGTAAGTGATGGAATGGAAGAGAAATATAGGTATAATGTGCAAGCTGCTAAGGAGAAACTATCGGAAATGGTGCTTTCGAAGAAGAACGATGGTGGGAAACCGTGTGAGAATGACATGGTTTTGGAGGAGATGACGAGGAATGATAAGGTTAAGGATGATTTTTGCAAGATATGCTACTTGACCGATGAAAATAGTAATGCATTTGCTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263134.1	1.4e-212	SNF2 domain-containing protein CLASSY 3-like
Swissprot	F4I8S3.1	8.8e-151	Protein CHROMATIN REMODELING 31
trEMBL	A0A5P1F4K0	1.0e-212	Helicase ATP-binding domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G05490.1	41.39	3e-158	556	chr31	chromatin remodeling 31

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g422816	AT1G05490.1	732	368	16	266	947	669	1389	41.39	3e-158	556
g422816	AT3G24340.1	716	369	12	264	952	433	1120	40.78	2e-146	516
g422816	AT3G42670.1	716	390	22	291	944	548	1241	33.80	1e-94	344

Ortholog group

Species	Genes
Allium cepa	g127968.t1; g127970.t1; g336082.t1; g392531.t1; g422816.t1
Allium fistulosum	AfisC1G00240; AfisC4G03304
Allium sativum	Asa0G03973.1; Asa0G05279.1; Asa4G02412.1; Asa4G02413.1
Arabidopsis thaliana	AT1G05490.1; AT3G24340.1
Oryza sativa	LOC_Os02g43460.1; LOC_Os05g32610.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00176.20	SNF2_N	Family	451	709	83.3	1.2e-23
PF00271.28	Helicase_C	Family	767	883	58.1	9e-16

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K10875	RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein	EC:3.6.4.-	Homologous recombination	ko03440

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network