result

Gene information

Detail information of g422842

Location

Gene	Chr	Start	End	Strand
g422842	CHR1	336933575	336936361	-

Sequences

CDS

>g422842.t1
ATGAAGAGAAAAGAAGGAGCTGTTGTATTTTACAGCTTAAATTGCAATACTCGTGCATGTATTTTGCTCACAACAAGAAACATACATTCATATCATAATTGCCAAACTTTTCTCCCTATATTTATATATAGCAGCACCGCATACATAATCAAGCTTTACCTCTTCGTAAAGATGGAAGGAGTAGGAGCGAAAAAAGAAGGGGAGAGTTTGCCTCCAGGATTTCGATTTCACCCAACCGATGAAGAATTGATTACTTATTACTTGACTCATAGAATTTCGGAGCCTAATTTCGATGCAAGAGCTGTTGCAGATGTTGACCTCAATAAGTGTGAGCCTTGGGATCTTCCTGGAAAGGCCAAAATGGGGGAAAAAGAATGGTATTTCTTTAGCCTAAGAGATCGAAAGTACCCAACTGGAGTTAGGACAAATAGAGCAACGACTGCTGGATACTGGAAAACGACCGGCAAAGATAAGGAGATATACAATAGCGAAACTTCAGAGCTGGTTGGAATGAAGAAGACATTGGTTTTCTACAAAGGAAGAGCTCCTAGAGGAGAAAAGAGCAACTGGGTTATGCATGAATACAGACTCCAATCCAGGCCTACATACAAACCAAACAAGGATGAGTGGGTGGTATGTCGAGTGTTCATGAAGAGGCCAGGAGCCAAAAAATACACCACTCAGCCGCGAGCGACGAACCCGTACTCGATCGACATGTCGACGAACGCAGCAATGATGCCAAACGGGCTGATGCATGCAACGGATCCATACAGCCATTTCGGCGTAAGTAGGTCTCACCACCTGACGCATGCGGATCTGGTTGAGTTGGCAAGGTTCGCCAAAGGGCAGCAGGGATACAACATACCTATCCAGCCACAGCCTAGCTTTCCAAATAACTACACGCTTTCTGGACTGAATTTGAACGTTGGATCACAGCAGCAGCAGCAACAGGTGTTGTTTGGAGGGTACAGTGGAGAAATGGGCAGTGGCAACGACAGCGGCAATGTAGGCAATAATGCAGCGAGGGTATTGGCCTACATACTGAAAGAACATGTGTGTATAACGTCATTTTTTTTAATATATGTAGTGGGACTTGTTAGCTTATTGTTGTCTAGATGTTGGAAAAATGTAATAATAGAAACAAATTTCTTGCTTATATTATGTGATTAA

Protein

Gene

>g422842.t1
ATGAAGAGAAAAGAAGGAGCTGTTGTATTTTACAGGTTAGAAAAGCGACGATCTTTGAAAAGCCGTCCATATGTTTTTTGTGTTAAAATATAGTTGGTGGTTTTTTAAAAGACGCCAACTATGTTTAAAAAAAATTATGCTGACGGCATTTTAAATGCCGTCAGTACACTTTTGACAGCTCAACGTTAAGCTGACGAAAAGTGGTCAAGGTTTGTAATAAGTTTACAAACAAGCTAAAGAGTAATAACTTTGTAAACTTACATCGGGTAAACTTTTTCGTTTTGAGTGAACAACCCTCATTGTCTTACTTTGATGTAACTGCCTTTACATTGGAAGGAATGTTTTAAACACCTTTTTTTAAGTGTTTCTTCTGTGTTCGAGAACCATCTTGAGAATTGGTAGGATCCTCCATGGTCTTAAATTTTAATATCTTTCTATTACATATACTCATAGATTAAAACAATTGAAATCGTAGTTTTTGATAAGATTTTGCTTTCTCATATGATTGATTAATCATAATTTGCACTCGTTGTATATTTTAGCATCATTTATTATAAAGCACAGGATTAATCCTAAGGCAAGACGAGAAATAAGACCGTTTAGTGCAACCGATCAAGAAAGAGCAACAAGCTACAATTTTATGTGTTTAGATTATATTTTGATGATGTTTTCTAAAATAATATTCACAATAATTCACGGGTTGAGATCTAATGTGATGGTTGTTTGTTCAATTTCGATCTAAGTAAACCCAAGTTCAATTCTTGGTTGCATTAAAGTTAAAAGTTCTTGCCTCGGCAACCAAAAGGTTGGGCTTCCCCGGATGCGCGTCTCATGTAAATGCATTTTTACTAACGATCTCCTATTCATAATAGCAGCAGCATAGAAGAGCCAACATCTCTATGTTTTACTAGAATAAAATTAAAATGTCACTATTAATTAAACTAGTAATTAAAAGCTTCAGTTACACTCATCTTTTTTGTCTCTTTCTCAATCCAAATAGCTTAAATTGCAATACTCGTGCATGTATTTTGCTCACAACAAGAAACATACATTCATATCATAATTGCCAAACTTTTCTCCCTATATTTATATATAGCAGCACCGCATACATAATCAAGCTTTACCTCTTCGTAAAGGTATTCTAGCCAAAAATTATCTTCTCGTTTGTATATCCATATAAACTCATAGATCCTGATATATTGCGTTGATTAAGCTTGAGTTTTCATATCATAGATGGAAGGAGTAGGAGCGAAAAAAGAAGGGGAGAGTTTGCCTCCAGGATTTCGATTTCACCCAACCGATGAAGAATTGATTACTTATTACTTGACTCATAGAATTTCGGAGCCTAATTTCGATGCAAGAGCTGTTGCAGATGTTGACCTCAATAAGTGTGAGCCTTGGGATCTTCCTGGTATCATTCTTTTCTCATATTGTCAAACCATCAATTGCATATTTCATCTTTAGTTTCTTTTCATTTTTGGTATGTTAGCGTACATGCCTAGGCTATTAGAACATGTTTGTATTGACTATCTCTCGTGTTTTGTCCATGAAAGTTATTCTTTTCACCAATATTCAGCACGCAAATTCATCGTATTGTCTTTTGTTGTACCAACCATAAAATTATCTTGTTCATTATCACATGCATATGTTATGTTTAAACTTTAAAGACATTTTAAAATACTGAAGAGCAAGACTCAGCGCATTTGATTATGTCAGTAGATTCGTTTATATTTTGTGTTACACACGCACCCACACACGCACAGAAAAAAAATGAAGATATTAACTTGGGTTTATGCAAACAAATTAATAAATGACCAGGAAAGGCCAAAATGGGGGAAAAAGAATGGTATTTCTTTAGCCTAAGAGATCGAAAGTACCCAACTGGAGTTAGGACAAATAGAGCAACGACTGCTGGATACTGGAAAACGACCGGCAAAGATAAGGAGATATACAATAGCGAAACTTCAGAGCTGGTTGGAATGAAGAAGACATTGGTTTTCTACAAAGGAAGAGCTCCTAGAGGAGAAAAGAGCAACTGGGTTATGCATGAATACAGACTCCAATCCAGGCCTACATACAAACCAAACAAGGTATGACGAATATGAAAAGTAGATCACCCACTTTGGTTCAAAACTGCTAACATGTAGTTTGATTTCAAAGCTACCTGAATGAGCTTTTTAACCGATATCTTGTGAACTCATAATAGGATGAGTGGGTGGTATGTCGAGTGTTCATGAAGAGGCCAGGAGCCAAAAAATACACCACTCAGCCGCGAGCGACGAACCCGTACTCGATCGACATGTCGACGAACGCAGCAATGATGCCAAACGGGCTGATGCATGCAACGGATCCATACAGCCATTTCGGCGTAAGTAGGTCTCACCACCTGACGCATGCGGATCTGGTTGAGTTGGCAAGGTTCGCCAAAGGGCAGCAGGGATACAACATACCTATCCAGCCACAGCCTAGCTTTCCAAATAACTACACGCTTTCTGGACTGAATTTGAACGTTGGATCACAGCAGCAGCAGCAACAGGTGTTGTTTGGAGGGTACAGTGGAGAAATGGGCAGTGGCAACGACAGCGGCAATGTAGGCAATAATGCAGCGAGGTTTCAGAACGTTGAGTGTGTAGACTTGGAAGGGTATTGGCCTACATACTGAAAGAACATGTGTGTATAACGTCATTTTTTTTAATATATGTAGTGGGACTTGTTAGCTTATTGTTGTCTAGATGTTGGAAAAATGTAATAATAGAAACAAATTTCTTGCTTATATTATGTGATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020266731.1	5.2e-113	NAC domain-containing protein 92-like
Swissprot	O04017.1	2.7e-66	NAC domain-containing protein CUC2
trEMBL	A0A804JY37	3.8e-97	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G24430.1	52.19	2e-76	282	ANAC038;ANAC039;NAC038	NAC domain containing protein 38

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g422842	AT2G24430.2	297	107	6	64	331	10	300	52.19	2e-76	282
g422842	AT2G24430.1	297	107	6	64	331	10	300	52.19	2e-76	282
g422842	AT3G18400.1	158	33	2	68	224	3	158	77.22	3e-70	262

Ortholog group

Species	Genes
Allium cepa	g15758.t1; g230464.t1; g402158.t1; g422842.t1; g523460.t1; g69493.t1; g73352.t1
Allium fistulosum	AfisC1G08943; AfisC5G02503; AfisC5G02509; AfisC6G04754; AfisC7G01939; AfisC7G02655; AfisC7G04462
Allium sativum	Asa3G01466.1; Asa3G02772.1; Asa3G03293.1; Asa7G07167.1; Asa7G07168.1; Asa7G07182.1; Asa8G02536.1
Arabidopsis thaliana	AT2G24430.1; AT2G24430.2; AT3G15170.1; AT3G18400.1; AT3G29035.1; AT5G07680.1; AT5G07680.2; AT5G18270.1; AT5G39610.1; AT5G61430.1
Oryza sativa	LOC_Os03g42630.1; LOC_Os04g38720.1; LOC_Os06g23650.1; LOC_Os07g48550.1; LOC_Os09g32260.1; LOC_Os09g32260.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	71	197	98.1	3.6e-28

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network