result

Gene information

Detail information of g42548

Location

Gene	Chr	Start	End	Strand
g42548	Scaffold_25690:HRSCAF_230903	134743	136312	-

Sequences

CDS

>g42548.t1
ATGGGCTATCCACTGATGAAGAAGCCAAGCTCAAGCTGGACTGCAAAGGCAGTGAAGGAGGCAGAGGCAGTGGCCGCAATAGACTGCTCCGGGCATGGCAGAGCTTACTTGGACGGAATCGTCGTCGATGGAGCTCCCATGTGCGAGTGCAACACTTGCTACACCGGTCCCCATTGCTCCACTTTGCTCCCTAACTGCTCCTCTGATGTTGTAAGCGGCGACGCTTTGTTTCTCGAAAAATATTGGATGCAACACAAATCCAACGCCGCTCTTCTCATATCACCCTGGCATAGAATGAGCTATTTCTTCCAGCCATCTTCCGCCGATGATAAGTACATCGTCTTCGGTACCGGCGTCACTCAACTCCTCAACGGTCTAGTCATCGCCCTTTCCCCAAACGATATATCACCCGATGTGCAACCATCAAAAGTTGTCGCTGCCGTCCCTTACTATCCCGTCTTCAGAAAGCAAACCAAATTCTTTCGTTTTACCGGCTACGAATGGAAAGGGAACGCATCCGATTACGTTAACGCCGCTTCTCCTCAAAACATCATAGAATTGGTGACTTCGCCCAATAATCCCGAAGGTCGATTTCACCATTCCATAATCAATGGCTCTTTAGCAATCCACGACCACGTCTACTATTGGCCGCATTATACCCCAATTGCACAACCCGCCAACGAAGATATAATGTGGGCGCTCATAAAGGACGTGAAAGTATACGACAGGGTAATGGAGTACATGACCGAGAACACGGAAGGAACTTCCCACGATACGCAACTTCGAACCTTGAAACTAATAAAGGAGATCTTGTTGCAAATGAAAACGAAACGGGAAACAATGGCCGACATCAACCAATTTGGCTATCAAACATTGTCTAAAAGATGGGCTGAACTTACCAAGCTAGTTGCATCTTCAGATCGATTCTCCCTTCAAAACCTCTCTCCGCAATATTGCAACTACTTCAAAAAAGTTAGAGATCCCTCACCATCATTCGGATGGCTAAAGTGTGAATGGGAGGAAGACACGGATTGTGAAGCTCTACTCAGGAATGCTCAAATTAAAACTCAAAGCGGAGTGCTTTTTGAAGCCGATAGTCGTTACACACGCTTGAGTTTAATCAAGACGGAGGACGACTTCGATCAAATGATGGAGAAGTTGAAGCCACTTGTATCTGCAAAAAGGAGCATTTGA

Protein

Gene

>g42548.t1
ATGGGCTATCCACTGATGAAGAAGCCAAGCTCAAGCTGGACTGCAAAGGCAGTGAAGGAGGCAGAGGCAGTGGCCGCAATAGACTGCTCCGGGCATGGCAGAGCTTACTTGGACGGAATCGTCGTCGATGGAGCTCCCATGTGCGAGTGCAACACTTGCTACACCGGTCCCCATTGCTCCACTTTGCTCCCTAACTGCTCCTCTGATGTTGTAAGCGGCGACGCTTTGTTTCTCGAAAAATATTGGATGCAACACAAATCCAACGCCGCTCTTCTCATATCACCCTGGCATAGAATGAGCTATTTCTTCCAGCCATCTTCCGGTAATATCATCAACGCCGAGCTTGAAAAAACACGTCAGACTTTTACATCAGGCCGTCGGTAATGCCAAAGCCGATGATAAGTACATCGTCTTCGGTACCGGCGTCACTCAACTCCTCAACGGTCTAGTCATCGCCCTTTCCCCAAACGATATATCACCCGATGTGCAACCATCAAAAGTTGTCGCTGCCGTCCCTTACTATCCCGTCTTCAGAAAGCAAACCAAATTCTTTCGTTTTACCGGCTACGAATGGAAAGGGAACGCATCCGATTACGTTAACGCCGCTTCTCCTCAAAACATCATAGAATTGGTGACTTCGCCCAATAATCCCGAAGGTCGATTTCACCATTCCATAATCAATGGCTCTTTAGCAATCCACGACCACGTCTACTATTGGCCGCATTATACCCCAATTGCACAACCCGCCAACGAAGATATAATGTTGTTTTTCCATGTCCAAATACACTGGACATTCCGGCAGCAGATTCGGGTACGACAGTCTTTTTATTTTTTCTTCTTCTTAATTAGTAACGTTAACTTTCATTCATATGTATATTGTCAACGGTGGTGGTCTGCATCATTCATGTATGCTAATCATAACAAATTACATATTGTATATATGTACAGGTGGGCGCTCATAAAGGACGTGAAAGTATACGACAGGGTAATGGAGTACATGACCGAGAACACGGAAGGAACTTCCCACGATACGCAACTTCGAACCTTGAAACTAATAAAGGAGATCTTGTTGCAAATGAAAACGAAACGGGAAACAATGGCCGACATCAACCAATTTGGCTATCAAACATTGTCTAAAAGATGGGCTGAACTTACCAAGCTAGTTGCATCTTCAGATCGATTCTCCCTTCAAAACCTCTCTCCGCAATATTGCAACTACTTCAAAAAAGTTAGAGATCCCTCACCATGTATGCTCCTAGCTAGCTACTTAATTAATTTCGCTAACTTTGTCCGTTTATATATATCTTCAAACCAACTGCATATATACATGCTTAACGCAATTGCTAATTTACATCAATTAATCGCAGCATTCGGATGGCTAAAGTGTGAATGGGAGGAAGACACGGATTGTGAAGCTCTACTCAGGAATGCTCAAATTAAAACTCAAAGCGGAGTGCTTTTTGAAGCCGATAGTCGTTACACACGCTTGAGTTTAATCAAGACGGAGGACGACTTCGATCAAATGATGGAGAAGTTGAAGCCACTTGTATCTGCAAAAAGGAGCATTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	BAD06448.1	3.4e-168	alliinase-like
Swissprot	P31757.2	1.7e-140	Cysteine sulphoxide lyase
trEMBL	Q76BK3	2.4e-168	Alliinase-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34060.1	40.09	3e-96	348		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g42548	AT1G34060.1	424	203	8	12	391	33	449	40.09	3e-96	348
g42548	AT1G34040.1	427	198	7	10	392	31	448	41.22	3e-93	338
g42548	AT1G23320.1	374	197	10	67	394	22	384	32.09	3e-56	216

Ortholog group

Species	Genes
Allium cepa	g250025.t1; g263449.t1; g263452.t1; g263472.t1; g263477.t1; g263482.t1; g263486.t1; g263494.t1; g263509.t1; g319507.t1; g319513.t1; g338583.t1; g338588.t1; g338589.t1; g338591.t1; g338595.t1; g338596.t1; g355818.t1; g355819.t1; g355823.t1; g415874.t1; g42548.t1; g461021.t1; g461022.t1; g461028.t1; g461037.t1; g461045.t1; g461049.t1; g83910.t1
Allium fistulosum	AfisC1G03786; AfisC1G03787; AfisC1G04276; AfisC2G00682; AfisC2G00683; AfisC2G00686; AfisC2G00687; AfisC2G00689; AfisC2G00700; AfisC2G00709; AfisC2G00710; AfisC2G00713; AfisC2G00717; AfisC2G00718; AfisC2G02421; AfisC2G02422; AfisC2G02427; AfisC2G02428; AfisC2G02429; AfisC2G02431; AfisC2G08609; AfisC3G03035; AfisC3G03036; AfisC3G03038; AfisC3G03044
Allium sativum	Asa0G00201.1; Asa0G01226.1; Asa0G02857.1; Asa0G03622.1; Asa2G02374.1; Asa4G00897.1; Asa4G00899.1; Asa4G00914.1; Asa4G00916.1; Asa4G04930.1; Asa5G00560.1; Asa5G02323.1; Asa5G02331.1; Asa5G02343.1; Asa5G04811.1; Asa5G05560.1; Asa6G00856.1; Asa6G00975.1; Asa7G04145.1; Asa7G04652.1
Arabidopsis thaliana	AT1G34040.1; AT1G34060.1
Oryza sativa	LOC_Os01g51980.1; LOC_Os01g52010.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04863.10	EGF_alliinase	Domain	12	66	99.5	8.7e-29
PF04864.10	Alliinase_C	Domain	69	104	41.0	9.6e-11
PF04864.10	Alliinase_C	Domain	107	390	404.9	2.5e-121

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network