result

Gene information

Detail information of g432884


Location
GeneChrStartEndStrand
g432884Scaffold_80556:HRSCAF_463642826453826956+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_022878461.11.4e-17zinc finger protein GIS3-like
SwissprotQ9C9H1.11.5e-13Protein GLABROUS INFLORESCENCE STEMS 3
trEMBLA0A8S0ULM69.7e-18Zinc finger 6-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G67030.166.679e-1886.3ZFP6zinc finger protein 6

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag251050.t1; g299254.t1; g432884.t1; g432885.t1
Allium fistulosumAfisC6G00174; AfisC6G04209; AfisC7G01520
Allium sativumAsa0G02901.1; Asa2G02108.1; Asa2G04272.1; Asa3G03621.1; Asa8G03153.1; Asa8G05848.1
Arabidopsis thalianaAT1G10480.1; AT1G67030.1; AT1G68360.1
Oryza sativaLOC_Os01g04120.1; LOC_Os01g32920.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF13912.3zf-C2H2_6Domain406425.86.9e-06

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000902Pcell morphogenesis
GO:0000904Pcell morphogenesis involved in differentiation
GO:0001067Fregulatory region nucleic acid binding
GO:0001101Presponse to acid chemical
GO:0006790Psulfur compound metabolic process
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005829Ccytosol
GO:0007165Psignal transduction
GO:0005488Fbinding
GO:0005840Cribosome
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006082Porganic acid metabolic process
GO:0006355Pregulation of transcription, DNA-templated
GO:0006807Pnitrogen compound metabolic process
GO:0007154Pcell communication
GO:0009653Panatomical structure morphogenesis
GO:0009888Ptissue development
GO:0008150Pbiological_process
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009735Presponse to cytokinin
GO:0009736Pcytokinin-activated signaling pathway
GO:0009739Presponse to gibberellin
GO:0009740Pgibberellic acid mediated signaling pathway
GO:0009755Phormone-mediated signaling pathway
GO:0009787Pregulation of abscisic acid-activated signaling pathway
GO:0009788Pnegative regulation of abscisic acid-activated signaling pathway
GO:0009889Pregulation of biosynthetic process
GO:0009966Pregulation of signal transduction
GO:0009968Pnegative regulation of signal transduction
GO:0009987Pcellular process
GO:0010026Ptrichome differentiation
GO:0010033Presponse to organic substance
GO:0010090Ptrichome morphogenesis
GO:0010468Pregulation of gene expression
GO:0010476Pgibberellin mediated signaling pathway
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010646Pregulation of cell communication
GO:0010648Pnegative regulation of cell communication
GO:0044212Ftranscription regulatory region DNA binding
GO:0016043Pcellular component organization
GO:0016143PS-glycoside metabolic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019748Psecondary metabolic process
GO:0019757Pglycosinolate metabolic process
GO:0019760Pglucosinolate metabolic process
GO:0022626Ccytosolic ribosome
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0023051Pregulation of signaling
GO:0023057Pnegative regulation of signaling
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032502Pdevelopmental process
GO:0032870Pcellular response to hormone stimulus
GO:0032989Pcellular component morphogenesis
GO:0032991Cmacromolecular complex
GO:0033993Presponse to lipid
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043436Poxoacid metabolic process
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044281Psmall molecule metabolic process
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044445Ccytosolic part
GO:0044464Ccell part
GO:0048468Pcell development
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048583Pregulation of response to stimulus
GO:0048585Pnegative regulation of response to stimulus
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071229Pcellular response to acid chemical
GO:0071310Pcellular response to organic substance
GO:0071368Pcellular response to cytokinin stimulus
GO:0071370Pcellular response to gibberellin stimulus
GO:0071396Pcellular response to lipid
GO:0071495Pcellular response to endogenous stimulus
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090558Pplant epidermis development
GO:0090626Pplant epidermis morphogenesis
GO:0097159Forganic cyclic compound binding
GO:1901135Pcarbohydrate derivative metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901419Pregulation of response to alcohol
GO:1901420Pnegative regulation of response to alcohol
GO:1901564Porganonitrogen compound metabolic process
GO:1901657Pglycosyl compound metabolic process
GO:1901700Presponse to oxygen-containing compound
GO:1901701Pcellular response to oxygen-containing compound
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1990904Cribonucleoprotein complex
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110
GO:1905957
GO:1905958

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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