result

Gene information

Detail information of g436788

Location

Gene	Chr	Start	End	Strand
g436788	Scaffold_80953:HRSCAF_464039	22744	26055	-

Sequences

CDS

>g436788.t1
ATGAGCTCCTCCTCCGATGAAGAGGCTCAGGACAGAGCGAAAAGAAGATTTGACCGAGCACAGGTTGAAGTTCTGGAGAGAGTTTTTAGTACTTGCCCTAATCCTGATGAACGTCGAAGAATTGAGATGAGTAGAAGCGATGAAAACGACAAATTAAGAAGTGAAATCGCTGAGATGCAAACAGCGATGAAAAACTATATGTGCTCACAATGTGGAGTTCAATTATCATCTCAAGAAGAAGAAGAGCAGTTGCTTTTATCGAACAACGAGAGCGTTAAGTCTGAGATTAACCGATGCATGGAAATTATAACTAACCAACTGGGAAGGTCATTTGCTGAAATGAAGTTGATGCAGTTTCCTTTAGGCATTGATAATGTTGTATTAAATAACACTTCCATGAATATTGCATTACCACCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTCATGTTTATGGTTTGCTCTCAAGCAGTGATAAAGCATTGCTTGTAGAGCAAGCAACAAACGCCATGCAGGAACTTGTAGAACTAGCCAGACCAACTGGCCGGTATTGGATCAAACCCACGTACGAAGACAAGGAAATACTTGATCTTTTCAACTATCGAAAGGCTTTCCAAACGATCAATAATCATTTGCGTAACAAGGATACTCAAGTTGAGGCTTCACGAGCTTCTGGCCTTGTGTGTATAAATCCTCTTTCTCTAGTTGATATCTTGATGGATCCGGCTAAGTGGGCAGACTTGTTTCAGACTGTCGTGGCTAAGGCAAATGTTATTGATGTCATTTCGGTAGGAATGGGTGGAGATAATCACAGTGGATCGTTATTGCTGATGTATAATGAAATTGGAATTCTTTGTCCTCTTATCCAGCCTCGCGAATATTACTTCGTTCGCTATTGCCAGAGGGTCAATAATGGTTCTTGGTTTATAACGGATGTATCGGTTAATTTTCCAGGCTTTTTACCAAAGAATAGAAGGTTGCCTTCAGGCTGCATGATTGAAGAGGCGCCTAATGGTTACTCTATGGTCACTTGGGTAGAGCATCTAGAAGTAGAAGAAAGTAATCGTAATCTTGGAGTCTTTCATAATTATATTCATAGCGGCAAGGCTTTTGGAGCTCAGCGCATGTTAGCAACACTTCAAAGAGTGACTGAGAGGTTTTATTACATGCGGGTGCTAGGACCTCAAAACATGGATACTGCAGGAGTGATTTTCACACAAGAAAGCAAAAGTAGCTTGATGTCTTTATCCCAAAGCATGGTGAGATCATTTTGCAGTAGCATGTTTCCTTCAAATGATTGGATTATTATCATGGACTCCGACGAGATTAAAATTCGAGCTCTTCCACATCAAATCATTGATAACTTTGGGTCTAATGGAATCATTCTTAATCCCATAACCTCTATATGGCTACCTTTTTCTACTGAACGAATTTTTAGCTTCTTTGTGGACGAATCAAAAAGAGATTTGGCTGGGACTTCAGATGAGAACCCGATACTACTGATGCAAGAGACAAGCACAGACTCATCAGCTTCAACACTAGTCTTTGCATCGATTGACAATTCAATTTTGCAGATTGTAATGAGTGGAGGTGAAGCACCGAATATCCCTCTCTTTTCTTCGGGTGTTGCAATTTTACCTAGTTCTACTTCATTGGTGAGCATGGGACCTTCCAGTAGTTCGAATCCAGCAATCCCTGGTTCATTCATAACTCTGTCATTTCAGATTCCATTGAACAATCAGTCTACAAACGACCTGAATTTGGATATGATAAACCGCTTGAATAGAATGATGACGGATGCAGTGAAGAACATGAAGACTATATTGAACTCCTCCCCTTGA

Protein

Gene

>g436788.t1
ATGAGCTCCTCCTCCGATGAAGAGGCTCAGGACAGAGCGAAAAGAAGATTTGACCGAGCACAGGTTGAAGTTCTGGAGAGGTACGCTAAACAATATTCATCTTGCGATGTCAGTTTCTTTTTCATTTTTTATTTTTTGACATCTAGTAATGGGGCCTGATCTTATTTTATTTTTAATGGGCAGAGTTTTTAGTACTTGCCCTAATCCTGATGAACGTCGAAGAATTGAGATGAGTAGAAGGTTAGGACTGAAGCCAAATCAGATAAAATATTGGTTTCAGAATAAAAGGACTTTTATCAAAGTATGGTTTTTATAATCAAAATTTTCATTTTATATCATAATCATTGTCGTTACACCCATTAATTCATCTCTTAATTGATGTGGTATTTGGTTTGATAGATAAACTGTATGTATAATTTCATTCTTTTTTTTAATATAGATACAAAACGATAAGCTTACTAACATGCAACTTAGCGATGAAAACGACAAATTAAGAAGTGAAATCGCTGAGATGCAAACAGCGATGAAAAACTATATGTGCTCACAATGTGGAGTTCAATTATCATCTCAAGAAGAAGAAGAGCAGTTGCTTTTATCGAACAACGAGAGCGTTAAGTCTGAGATTAACCGATGCATGGAAATTATAACTAACCAACTGGGAAGGTCATTTGCTGAAATGAAGTTGATGCAGTTTCCTTTAGGCATTGATAATGTTGTATTAAATAACACTTCCATGAATATTGCATTACCACCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTCATGTTTATGGTTTGCTCTCAAGCAGTGATAAAGCATTGCTTGTAGAGCAAGCAACAAACGCCATGCAGGAACTTGTAGAACTAGCCAGACCAACTGGCCGGTATTGGATCAAACCCACGTACGAAGACAAGGAAATACTTGATCTTTTCAACTATCGAAAGGCTTTCCAAACGATCAATAATCATTTGCGTAACAAGGATACTCAAGTTGAGGCTTCACGAGCTTCTGGCCTTGTGTGTATAAATCCTCTTTCTCTAGTTGATATCTTGATGGATCCGGTTAGCACTTTTCTAATTTTCACCTCCTTTTTTTTTAATTATTAATGGACCTTTTATTCAAAATTGAACTTCGTTTTTATATTGTAGGCTAAGTGGGCAGACTTGTTTCAGACTGTCGTGGCTAAGGCAAATGTTATTGATGTCATTTCGGTAGGAATGGGTGGAGATAATCACAGTGGATCGTTATTGCTGGTATTTAACTAGAAGTACTTCATTCTCATCATAATGGTTTCCGATTTTTTCTAGCCAGAATATATAATTGAATAATTCTTCAATGCAGATGTATAATGAAATTGGAATTCTTTGTCCTCTTATCCAGCCTCGCGAATATTACTTCGTTCGCTATTGCCAGAGGGTCAATAATGGTTCTTGGTTTATAACGGATGTATCGGTTAATTTTCCAGGCTTTTTACCAAAGAATAGAAGGTTGCCTTCAGGCTGCATGATTGAAGAGGCGCCTAATGGTTACTCTATGGTAACTCACTCATGCTAGATATCATATGAAATGGAAGAAAACATAAAACACTTTATGCTATTGTGTTGTTTGATGGTCAGTGTAGCTTATAAAGTTGTAAAAAGCTGCCAGTTTCTACAATTGAATCAATGAGTGTTTGACAATAGCTTTTAAGTACCAAAAGCAGATAACGAGTTAGGTTTATAATTTGAATTGTTTGATAACAACTTAATTTTCTGATTTTGAAGTAAGAGAGAATGATAAGTCATAAGCAACAAATGCTTTCTTATTACATATTTCAAATTTCAGAATTACATTTTGTCACAATATCAACTTATCTATCCAAACACTTCCACTTTTATTTTTCACTCGAAACTAATCATTCTGGGAAAATTTAAATTATGTTGTACTGATTTTTTACTTATATTTATCTTTTATATCATTTACAAACTCAATGTAGGTCACTTGGGTAGAGCATCTAGAAGTAGAAGAAAGTAATCGTAATCTTGGAGTCTTTCATAATTATATTCATAGCGGCAAGGCTTTTGGAGCTCAGCGCATGTTAGCAACACTTCAAAGAGTGACTGAGAGGTTTTATTACATGCGGGTGCTAGGACCTCAAAACATGGATACTGCAGGAGGTACAAATTTCAAATTACAATTATTTCTGCATTGTGTTTTGCTTGATTTTTACTTATAATGGCATATTTCAGTGATTTTCACACAAGAAAGCAAAAGTAGCTTGATGTCTTTATCCCAAAGCATGGTGAGATCATTTTGCAGTAGCATGTTTCCTTCAAATGATTGGATTATTATCATGGACTCCGACGAGATTAAAATTCGAGCTCTTCCACATCAAATCATTGATAACTTTGGGTCTAATGGAATCATTCTTAATCCCATAACCTCTATATGGCTACCTTTTTCTACTGAACGAATTTTTAGCTTCTTTGTGGACGAATCAAAAAGAGATTTGGTAATTAACATTTCTTGTAATTCTTCTCCTCATGCTATTTAGAATGAATCATGATGATATTTACAGTCTTCTTTTTTTTTCTTTTTCTTTTACTCGTTCGTGACAGTGGGATATTTTATCGATTGGAAATATGATGCAACCAATCACAAACCTCTTCACTGGTTTTAACATTGGAAATTGTATCTCGCTCCTACGAGTAAGTTTTCCTATTCTTTCTTAGTATTATAATTTTGTGTTTAAAACTAACACAAAGCAAACATGCTATAGACGGTCTTCTAAGAAAATGTGTTGGGTTACTTCTGGACCTTTGGTCATACATAAGGATCAAAGAGGTGGTTACCTTCTATTGAGAAACATTTTTAAGAATATGGATAGAAAGAAGAAACAGCAGTATTTAGATTTGTCTAAATGCTATTATATAGTAACATTATACTGTTATTATAGGCTGGGACTTCAGATGAGAACCCGATACTACTGATGCAAGAGACAAGCACAGACTCATCAGCTTCAACACTAGTCTTTGCATCGATTGACAATTCAATTTTGCAGATTGTAATGAGTGGAGGTGAAGCACCGAATATCCCTCTCTTTTCTTCGGGTGTTGCAATTTTACCTAGTTCTACTTCATTGGTGAGCATGGGACCTTCCAGTAGTTCGAATCCAGCAATCCCTGGTTCATTCATAACTCTGTCATTTCAGATTCCATTGAACAATCAGTCTACAAACGACCTGAATTTGGATATGATAAACCGCTTGAATAGAATGATGACGGATGCAGTGAAGAACATGAAGACTATATTGAACTCCTCCCCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256822.1	8.8e-115	homeobox-leucine zipper protein ROC8-like isoform X1
Swissprot	Q9FX31.1	5.4e-85	Protein HOMEODOMAIN GLABROUS 11
trEMBL	A0A804JUK6	1.3e-104	Homeobox-leucine zipper protein HDG11-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G73360.1	32.61	6e-96	348	AtEDT1;ATHDG11;EDT1;HDG11	homeodomain GLABROUS 11

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g436788	AT1G73360.1	696	363	14	11	611	30	714	32.61	6e-96	348
g436788	AT1G17920.1	687	370	14	4	611	12	682	32.31	2e-89	327
g436788	AT4G00730.1	691	384	18	3	610	122	798	30.39	3e-83	306

Ortholog group

Species	Genes
Allium cepa	g342037.t1; g342050.t1; g436788.t1; g436805.t1; g92394.t1
Allium fistulosum	AfisC1G04029; AfisC1G05844; AfisC5G01864
Allium sativum	Asa4G04746.1; Asa4G04748.1; Asa4G04750.1; Asa4G04752.1; Asa4G04755.1; Asa4G04756.1; Asa4G04757.1; Asa7G00687.1; Asa7G03531.1; Asa7G03533.1; Asa7G03536.1; Asa7G07700.1; Asa7G07701.1
Arabidopsis thaliana
Oryza sativa	LOC_Os07g47130.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01852.16	START	Domain	168	387	107.6	5e-31

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043565	F	sequence-specific DNA binding
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network