result

Gene information

Detail information of g448434

Location

Gene	Chr	Start	End	Strand
g448434	Scaffold_82171:HRSCAF_465257	111271	113770	-

Sequences

CDS

>g448434.t1
ATGAATTTGCTCGCAGAAAGAATCTCTTTACAGGCACAACAACAGTCAACACTGAGAAGTAACAGCAATCAACTCCTCCTTTTCGGTAAACCAGCTCATAATGTGAAAGATGCATCACTAGCAGCGAACAAATCAATGGCAGAAAAATGTTTAGATTCTCAGCTATGGCACGCATGTGCGGGAGGCATGGTTCAAATGCCCTCCTCTAATTCGAAGGTATACTACTTCCCTCAGGGACATGCAGAGCACTCTCAGTCTCCTATTGATTTCGGAGCTCCAAGAATTCCCTCCATCCTTTGCCGGGTCGTCTCAGTCAAATTTTTAGCAGATCCAGAAACAGACGAAGTCTTTGCCAAGATCCTCCTCGTACCAGAAGCAGAATTTGGTGGGGAAGATCATAATGATATAGGATTGGAGTTGCAAGAAAAGCCAGCTTCATTTGCAAAGACTTTGACGCAGTCAGATGCTAATAATGGTGGAGGTTTTTCTGTGCCAAGGTACTGCGCAGAGACAATATTTCCTAAACTGGACTACACAGCAGATCCTCCTGTTCAGACTGTGCTAGCGAAAGATGTGCATGGAGAGGTATGGAAGTTTAGGCATATTTATAGGGGTACCCCTAGAAGGCACTTGCTGACTACTGGGTGGAGCACTTTTGTGAATCAAAAGAAGCTTGTGGCTGGGGATTCGATCGTCTTTTTACGTGCTGCAAACGGAGATTTGTGTGTAGGGATAAGGAGGGCGAAACGTGGAGTTGGATGTGGGCCAGAGCAGCCTTCTGGGTGGAACCCGCCGCCCACTTATGGAAGAGGGTTGTCTGTGTTTTTAAGAGAAGAAGAGAATGGTAATAATAGAAATAGGGGTAGTAGTGGAAATATGAAAGGGAAGAGTAAGGTAAGGAGTGAGTCAGTGATTGAGGCAGCTAGACTTGCTGCCAGTGGTCAGGCTTTTGAGGTGGTGTACTATCCTAGGGCAAGCACACCTGAGTTTTGTGTTAAGGCAGGTGCGGTTAGAGGGGCCATGAGGGTTCAGTGGTGCCCGGGTATGAGGTTTAAGATGGCTTTTGAGACGGAAGATTCTTCAAGAATTAGCTGGTTTATGGGTACTGTTTCTTCTGTTAGTGCTACTGATCCTGTTCATTGGCCTAATTCTCCTTGGAGACTTCTTCAGGTGACATGGGATGAGCCTGACCTGCTTCAAAACGTTAAGCGGGTTAGTCCATGGCTAGTAGAACTAGTTTCGAACATGCCAACTATACATTTATCTCCATTCTCTCCACCACAACCGAGGAAGAAGCTGCGTTTTCCACCCAACTCTGAATATACTCAAGACACCCACCATTTCTCGCAGTTACCACCCACCTTCACTACAAACCCCCATGGGCCCTACGTGGGCATACAGGGAGCCAGGCATGCTCATTACAGTAGTGTTGGTGGTGGCAGCAGCAGCAGCAACAATACTGTTTTCTCTCTTCCAGATCTCCATTTTAAGAAACTTCAATCTGGGTTTTTTCATGCAAGGCTTGAACCTAAACCTAAGCTCATAGAAGACGATAACATATCTTGCTTATTGAGTATAGGAAGTCCTGCTACATGTGTTAGCGTGAAAAAAGCGACTCAGTTGGTCCTTTTTGGGCAGCCAATACTGACTGAAGAGCAGATATCTCTTAGCAGTGGTTCAAGGAACAGTTCTTCTGAATCCATGGCTTCCAGGGTGGAGGCTGGACGGTGCAAGGTGTTCAAAGAACCTGATGATGTCGGTGTGAATATTGATCTTTCTATGTTTGAATCTTATGATGAGTTATATTGCAAGTTAGCTGACATGTTTGGAGTTGAGAAGAGGGAGATCGTTAGTCGTTTCTGCTATCATGATACCAATGGTTCAGTTAAACATGCGACGGATGCACCTTTCAGCGAGTTCGTCAAAACGGCAAGCAGGTTGACTATACTCATGGAGTAG

Protein

Gene

>g448434.t1
ATGAATTTGCTCGCAGAAAGGTAACACGCAAATCACCTCTTCTCTGCATTTTACAGTAATTCATCCAATATCCAAATCAAAATAATATCGTATAAATGTGTGAATACAGAATCTCTTTACAGGCACAACAACAGTCAACACTGAGAAGTAACAGCAATCAACTCCTCCTTTTCGGTAAACCAGCTCATAATGTGAAAGATGCATCACTAGCAGCGAACAAATCAATGGCAGAAAAATGTTTAGATTCTCAGCTATGGCACGCATGTGCGGGAGGCATGGTTCAAATGCCCTCCTCTAATTCGAAGGTATACTACTTCCCTCAGGGACATGCAGAGCACTCTCAGTCTCCTATTGATTTCGGAGCTCCAAGAATTCCCTCCATCCTTTGCCGGGTCGTCTCAGTCAAATTTTTAGCAGATCCAGAAACAGACGAAGTCTTTGCCAAGATCCTCCTCGTACCAGAAGCAGAATTTGGTGGGGAAGATCATAATGATATAGGATTGGAGTTGCAAGAAAAGCCAGCTTCATTTGCAAAGACTTTGACGCAGTCAGATGCTAATAATGGTGGAGGTTTTTCTGTGCCAAGGTACTGCGCAGAGACAATATTTCCTAAACTGGACTACACAGCAGATCCTCCTGTTCAGACTGTGCTAGCGAAAGATGTGCATGGAGAGGTATGGAAGTTTAGGCATATTTATAGGGGTACCCCTAGAAGGCACTTGCTGACTACTGGGTGGAGCACTTTTGTGAATCAAAAGAAGCTTGTGGCTGGGGATTCGATCGTCTTTTTACGTGCTGCAAACGGAGATTTGTGTGTAGGGATAAGGAGGGCGAAACGTGGAGTTGGATGTGGGCCAGAGCAGCCTTCTGGGTGGAACCCGCCGCCCACTTATGGAAGAGGGTTGTCTGTGTTTTTAAGAGAAGAAGAGAATGGTAATAATAGAAATAGGGGTAGTAGTGGAAATATGAAAGGGAAGAGTAAGGTAAGGAGTGAGTCAGTGATTGAGGCAGCTAGACTTGCTGCCAGTGGTCAGGCTTTTGAGGTGGTGTACTATCCTAGGGCAAGCACACCTGAGTTTTGTGTTAAGGCAGGTGCGGTTAGAGGGGCCATGAGGGTTCAGTGGTGCCCGGGTATGAGGTTTAAGATGGCTTTTGAGACGGAAGATTCTTCAAGAATTAGCTGGTTTATGGGTACTGTTTCTTCTGTTAGTGCTACTGATCCTGTTCATTGGCCTAATTCTCCTTGGAGACTTCTTCAGGTAGTTTTACTTGGAGCCTATTTATCTGCTATTTATTTTAAACCTCATTGAAAGAAGTTTTGAGCAGTAAATTTGAATAGTTTCGAGTGAATAGTGAAAATTTCACTTGGAAGTGTTTGAATTTGTTTGTTTCTACTCAATTACTTATTTGATACTGTTAAGTCAAAATTTTAAATTTTCTACAAACACTAACTTGTAAGCTACTTCTGCTACTCATAAGTTGGTATCAAACACTGTTGGTTTTTTTGGCAGATTAAGTCATTTCCGGTTATTCAAAGAAATTTATACATTCAGTAGAATCAATTGTTGAGCAAAGAAACATACTATTAGATTTGCACTATGTATTGTTAATTAAGATTTTTGATTTGTAGGTGACATGGGATGAGCCTGACCTGCTTCAAAACGTTAAGCGGGTTAGTCCATGGCTAGTAGAACTAGTTTCGAACATGCCAACTATACATTTATCTCCATTCTCTCCACCACAACCGAGGAAGAAGCTGCGTTTTCCACCCAACTCTGAATATACTCAAGACACCCACCATTTCTCGCAGTTACCACCCACCTTCACTACAAACCCCCATGGGCCCTACGTGGGCATACAGGGAGCCAGGCATGCTCATTACAGTAGTGTTGGTGGTGGCAGCAGCAGCAGCAACAATACTGTTTTCTCTCTTCCAGATCTCCATTTTAAGAAACTTCAATCTGGGTTTTTTCATGCAAGGCTTGAACCTAAACCTAAGCTCATAGAAGACGATAACATATCTTGCTTATTGAGTATAGGAAGTCCTGCTACATGTGTTAGCGTGAAAAAAGCGACTCAGTTGGTCCTTTTTGGGCAGCCAATACTGACTGAAGAGCAGATATCTCTTAGCAGTGGTTCAAGGAACAGTTCTTCTGAATCCATGGCTTCCAGGGTGGAGGCTGGACGGTGCAAGGTGTTCAAAGAACCTGATGATGTCGGTGTGAATATTGATCTTTCTATGTTTGAATCTTATGATGAGTTATATTGCAAGTTAGCTGACATGTTTGGAGTTGAGAAGAGGGAGATCGTTAGTCGTTTCTGCTATCATGATACCAATGGTTCAGTTAAACATGCGACGGATGCACCTTTCAGGCAAGTTCTAATTATCGATTGAAATTTTGTCAGTTCATACAGCGACCTTGTTATGCTAACTTTGTTCTGAATTTGTTTCAGCGAGTTCGTCAAAACGGCAAGCAGGTTGACTATACTCATGGAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259737.1	6.4e-241	auxin response factor 18-like isoform X1
Swissprot	Q9AV47.1	2.0e-194	Auxin response factor 22
trEMBL	A0A5P1EYY5	4.6e-241	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	55.72	0.0	668	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g448434	AT4G30080.1	673	215	19	44	652	9	662	55.72	0.0	668
g448434	AT2G28350.1	669	216	15	48	652	4	659	56.20	0.0	664
g448434	AT1G77850.1	546	280	15	41	553	6	536	39.93	5e-98	355

Ortholog group

Species	Genes
Allium cepa	g192625.t1; g448434.t1
Allium fistulosum	AfisC1G08708; AfisC7G04848
Allium sativum	Asa3G01183.1; Asa7G06995.1
Arabidopsis thaliana	AT2G28350.1; AT4G30080.1
Oryza sativa	LOC_Os02g41800.1; LOC_Os02g41800.2; LOC_Os04g43910.1; LOC_Os06g47150.1; LOC_Os06g47150.2; LOC_Os06g47150.3; LOC_Os06g47150.4; LOC_Os10g33940.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	147	248	75.1	2.8e-21
PF06507.10	Auxin_resp	Family	307	390	112.9	5.5e-33

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network