result

Gene information

Detail information of g449000

Location

Gene	Chr	Start	End	Strand
g449000	Scaffold_82225:HRSCAF_465311	580327	583387	+

Sequences

CDS

>g449000.t1
ATGAATTTTAGGAGAACAGATGGAGGTTTGAAGGGGATACTAGTCTACCCCTCGGCATCACATGCATTTTTCTACAAATATCAAGGGTATTCTCGACATTCAAGGCAGTACGATATTTTCCACTTCCCTTTTCCGCTTTCTTCAAATGTCTTCATCTCCGATCCCAATTTTCCGTCAACGTTACCGTTATCGTCTTTAGTGATGGAAGCCGATGGCGCATCTTCATCCGAATCTTCATCAACGGTTAGGGGTACGTCTAACGGAAGCTCTTCGTCGGCGCTGCCTCCGCCGTTCTTGAGTAAGACTTACGACATGGTCGAAGATCCGACGAGTGATTCCATCGTTTCTTGGGGGGCGAATAATAATAGTTTCATAGTTTGGAATCCTCCTGAATTTGCCAGGGATTTGTTGCCCAAGTATTTTAAACACAATAATTTCTCCAGTTTTGTGCGTCAGTTGAATACCTATGGTTTCAGGAAAGTTGATCCCGACAAGTGGGAATTCGCAAATGAGGGTTTTTTAAGAGGTCAAAAACATCTTCTAAAGAGCATAACTAGAAAAAGATCATCTCATGCACAAACACCATCAGCACCACCTCAACCTCAGAAGGCCGCTTGCGTAGAAGTAGGCAAGTTTGGACTAGAGGAAGAGATCGAACAACTAAAGAGGGACAAAAACGTCTTAATGCAAGAGCTGGTCAGACTCAGACAACAGCAACAAACAACTGACAATAAACTGCACACATTAGGTGACCGCCTTCATGGCATGGAGCAAAGGCAGCAGCAAATGATGTCCTTCCTGGCTAAGGCAATGCAAAGCCCTGGCTTTTTAGCCCAGCTTGTGCAGAAAACGGATGCTAACAGAAGAATCACCATTGGCAACAAAAAGAGAAGGTACCCCAAGCAAGAACATAACCAAAGCAGCGATCAAGTATCAGCCGTTGATGGACAGCTGATCAAGTATCAGCCGTTGATCAACGAAGCTGCCAAATCGATGGTCCTTCAAATGCTCAATCTGGACAAGCCTTCTGATACTTTCTTGTTCGAAAACTTTCTTAATGATAGCGTAAGTCTGCCTCGTACTTCTGGGGTTACCCTTAAAGAGGTTGTTCCTACAGGGATGTCTTATCTGCCTTCAGATTTTGATAAAATGCAAGGAATTAATCAAGAGTTTGCAAAGAAAGCCGTTGAGGAAGATGATAATAATATCGATTTCGATGCTTTGACCGATGGCTTTGATTTTTTGGATGGGATTGAGGATTTGCCGAGTATAGGAGATCCTTTTTGGGAACATTTGCTTCAGACCCCTAGTGGTGCAGATGATAGCGAGGAGATGGTTATAGAAGGAGAGAATGGGTGGGACAGTTCTCAGAATGTGGAGAATCTGACTGAACAAATGGGTCATCTTTCTTCAGAGAATAAGAAATGA

Protein

Gene

>g449000.t1
ATGAATTTTAGGAGAACAGATGGAGGTTTGAAGGGGGTAGTTGAAATTATATAGTATGCGTATGTATGAGGCCGAGAAACACAACTACACGTTTCGAAGTAATTGCTGTGTGCGTTGAAAATGACAAAATTAACCCTGAACAAACATTTCTGATTTAATTGTCAAAGTGAGTATTTTGGTCAATGCGAAAAAAGCTTCATTTTGACCGGTTTATTAAAGGTTATGCTTTATAGTATAAGATTATTTTTTTTCTCCAAAAGTTGTTCTTTTAAAGTGAATAACAGAAGTTGTTGTCCTTCAAAACGATAAAGGAAACAATTTTGTCACCAAGTAAGTGTTTCATAAAATTGTGTTCATAACCCTTAAATTAAATAAACTGAAAACCGCAAAATTGCTGAGCTGTTATATCGACTCTTTTAATAGATACTAGTCTACCCCTCGGCATCACATGCATTTTTCTACAAATATCAAGGGTATTCTCGACATTCAAGGCAGTACGATATTTTCCACTTCCCTTTTCCGCTTTCTTCAAATGTCTTCATCTCCGATCCCAATTTTCCGTCAACGTTACCGTTATCGTCTTTAGTGATGGAAGCCGATGGCGCATCTTCATCCGAATCTTCATCAACGGTTAGGGGTACGTCTAACGGAAGCTCTTCGTCGGCGCTGCCTCCGCCGTTCTTGAGTAAGACTTACGACATGGTCGAAGATCCGACGAGTGATTCCATCGTTTCTTGGGGGGCGAATAATAATAGTTTCATAGTTTGGAATCCTCCTGAATTTGCCAGGGATTTGTTGCCCAAGTATTTTAAACACAATAATTTCTCCAGTTTTGTGCGTCAGTTGAATACCTATGTAAGTTTCTTTGTCATTTTATTTAAACATGATTTGCTGATGGCAGCCAAGAATTAAATTTTGATACGGACCCCATGAGTTATTTGTTGTCCTCTTGTTTCTATTGAGTAGCAGAGTGATGTGACTTTGGATATACAACGTCAGTGATATGCAACAAGCGGGAAATCCCTACTTTTTGAATTTTGACAATTGATGTATTAACTTCTCTTAACGTTCATATGAAATATATAATTATATCGTTCTGATCAGTTATGAAAACGGTTATCAGCTCTATCATCTTTTTTGGTTGTCATGCTCATTGTACACTTGTGAAAATTTAGCAAGATATTTTGTGCTCAACAAGTGTAATTTCCTATCTGCACTGGAAGTTCAGTTTCTTGAGTAAAATTTATTAAGGGTCTCTTTGATAAACATAGCAGTTCCTTCTTTTCTACCTGATCAATCCCTTAAAATGTGTGAATGAGTCAAACGGTGTGTCATGTCGTCAATTATTGATAAATCTCTAAAGCAACCATATCTTACTGTGCTGATACGTGTTTTAAATGCTCATGTTTGAGTATTACTAATGTATAATGTTTTGAGTATTCATAATAACTACAACACGAAGAAGGGTTATCTTCTATCTGCACTTCAAGCGTGTTGTATAACTTCATTAAGGATCACTTTGATACAGCTAGCAGATAAACGTGATAACCACTTCTTTTGATCGGGTCCTTTACATTTTATATGAATTAAACAATATGACATGCCATCAACTGTCGATAAATATCCAAGCTTAACTTATTCTTTCTAAGCAGATGTTGGTTATGAGTGCACATGTTTAATTGTTGCTATTTTTAACTTCAAACCTACCATTTTATAATTTTTATACTTCATATGTCAGTCTTTCCTTCAACAATCAACATTAACATTTGATGCATCCATGTGCTGATTATGATTCATATTACATCTTCTTATTTACTGTAAAGACGCACAATCATTGTTTGAGTACCTAACCCAGTTGATTTGGTCACATGGTTTGATTCTATGACATTCAATTAACAGTATAGTTATATTTTTTTTTTTCTTTTTGTTGTTGTTGTTGTTGTTCCTATGAGTAAACATAACTTGAAACGAAAGTCAAAATGAAAAGAAACATTCTAATAATCAATTCCCATTCACTCCTGCTTAAATAGTTTCAAACTGTTTTGCCTGTTGCTTTGACATTAACTTCTCAATGTACTTATGTTCTTGTCAACTATTGAAGGGTTTCAGGAAAGTTGATCCCGACAAGTGGGAATTCGCAAATGAGGGTTTTTTAAGAGGTCAAAAACATCTTCTAAAGAGCATAACTAGAAAAAGATCATCTCATGCACAAACACCATCAGCACCACCTCAACCTCAGAAGGCCGCTTGCGTAGAAGTAGGCAAGTTTGGACTAGAGGAAGAGATCGAACAACTAAAGAGGGACAAAAACGTCTTAATGCAAGAGCTGGTCAGACTCAGACAACAGCAACAAACAACTGACAATAAACTGCACACATTAGGTGACCGCCTTCATGGCATGGAGCAAAGGCAGCAGCAAATGATGTCCTTCCTGGCTAAGGCAATGCAAAGCCCTGGCTTTTTAGCCCAGCTTGTGCAGAAAACGGATGCTAACAGAAGAATCACCATTGGCAACAAAAAGAGAAGGTACCCCAAGCAAGAACATAACCAAAGCAGCGATCAAGTATCAGCCGTTGATGGACAGCTGATCAAGTATCAGCCGTTGATCAACGAAGCTGCCAAATCGATGGTCCTTCAAATGCTCAATCTGGACAAGCCTTCTGATACTTTCTTGTTCGAAAACTTTCTTAATGATAGCGTAAGTCTGCCTCGTACTTCTGGGGTTACCCTTAAAGAGGTTGTTCCTACAGGGATGTCTTATCTGCCTTCAGATTTTGATAAAATGCAAGGAATTAATCAAGAGTTTGCAAAGAAAGCCGTTGAGGAAGATGATAATAATATCGATTTCGATGCTTTGACCGATGGCTTTGATTTTTTGGATGGGATTGAGGATTTGCCGAGTATAGGAGATCCTTTTTGGGAACATTTGCTTCAGACCCCTAGTGGTGCAGATGATAGCGAGGAGATGGTTATAGAAGGAGAGAATGGGTGGGACAGTTCTCAGAATGTGGAGAATCTGACTGAACAAATGGGTCATCTTTCTTCAGAGAATAAGAAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020242275.1	4.4e-130	LOW QUALITY PROTEIN: heat stress transcription factor A-1-like
Swissprot	Q84T61.1	1.5e-103	Heat stress transcription factor 3
trEMBL	A0A5J6SCC5	2.1e-126	Myb-like transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G16820.1	47.25	3e-100	362	ATHSF3;ATHSFA1B;HSF3;HSFA1B	heat shock factor 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g449000	AT5G16820.2	455	165	13	96	475	26	480	47.25	3e-100	362
g449000	AT5G16820.1	455	165	13	96	475	26	480	47.25	3e-100	362
g449000	AT1G32330.1	476	187	10	63	472	3	476	46.43	1e-98	357

Ortholog group

Species	Genes
Allium cepa	g132167.t1; g449000.t1
Allium fistulosum	AfisC2G00925; AfisC5G00064
Allium sativum	Asa5G00955.1; Asa6G06026.1
Arabidopsis thaliana	AT3G02990.1; AT4G17750.1; AT5G16820.1; AT5G16820.2
Oryza sativa	LOC_Os03g63750.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00447.14	HSF_DNA-bind	Family	98	187	110.6	3.8e-32

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009266	P	response to temperature stimulus
GO:0009408	P	response to heat
GO:0009628	P	response to abiotic stimulus
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09419	HSFF; heat shock transcription factor, other eukaryote	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network