result

Gene information

Detail information of g455835

Location

Gene	Chr	Start	End	Strand
g455835	Scaffold_82914:HRSCAF_466000	415130	418337	+

Sequences

CDS

>g455835.t1
ATGGCTTCTAACGGCCTCCATCGGCTAAATGTCATTTTAAGCCGTTGGAATAGCCCCGTTGCTTCCATTGGAAAGCGTGAATGCTATTCCAACGGCTCCCAACGGCTGGTAGCCGTTGGAATAGCCGAAAAACTTCAAGCTACCTGTGAGATGATGAACCAGTTCATGGGACTAAGAAATCGAAGACAGAGTATCAGAAATGCAGCTGCAAACTCGCTGGCATCTCCCAGGTTCACCGTACGCTTCCGTACTACGGTCGTAGATTGCCACGTGCCTTCACCTCGTATAGGACCCACGCGACATTTGAGAATTAATGCAGAGGATCTTCTGCACAATACGAAGTTTGCAGTGTTGAAGCCAGCTATTGTTTCTTTCTCGCTCGACTTAAAAACTGCGGTTACAGCGAGAGAAGAATTCGAAGAATTCAAGGAAGAAGCTAGCATTCAAATTATGGAGGAGACTGCTAACTCAACCGCTTTAGCTACGTACATAGGAGTACGTAAAAGAAAATGGGGGAAATGGGTATCCGAAATCCGGGAGCCCGGTAAGAAAACCCGCATCTGGCTCGGCAGTTTCGAGACGCCAGAAATGGCGGCCGTTGCGCATGACGTGGCAGCATTCTGGCTCAAAGGCCAAAACGCGCGTCTGAACTTTCCGGACTCAGTGGGCCAGTATAGGAAGCCCCTGAGTTCGGATCCTAACGACGTGCGATCCGCTGCACTGGAAGCTGCGTTGGAAGTTAAGTTACGGCAAGGTGAGGACGATTTGGAGAAGATGCTGTGTGTAAGTAAACCTGCTGGTGGATTGGAGAGGTTAGGGTCTGGGCCGGGTATCGGGTACGGTGGGAACGATTGGGGCCCGGATTCTCCGAAGATGTGGAGAGAACTAGCTGAGGCAATGTTGGTTTCTCCGCCGCAGTTGAGTTGGCCGGAGGTGAATCATGAAGTGGAAGCTTTGGAGCATGGGTCGACTAATTTGTGGGGTCTGTTTTAG

Protein

Gene

>g455835.t1
ATGGCTTCTAACGGCCTCCATCGGCTAAATGTCATTTTAAGCCGTTGGAATAGCCCCGTTGCTTCCATTGGAAAGCGTGAATGCTATTCCAACGGCTCCCAACGGCTGGTAGCCGTTGGAATAGCCGGTTTCTCTTGCAGTGTAACGGTTAATTACATTATATAAATACCTCACTCTTTCTCCTTGTGTTCACACCACTTCTCATTCACGCTGATATCATTCTTGCAAACATAATGTCTAACGCTGATTCCATTGATGAAGATTTGAATAAGCCCGACGACCAACAATTCAACACTGTATTGGAACAAATTTGGAATTTAAATTGATACTATGTCTTTAAAAAAAATTGTATGAAGTTATATATACAAACATCGGCGTACGATGCTTAGTGGTAGTGCTTTACCATTTATTTGTCGAAAAGGATACATGATACAAAACGTTACGTCGTCATTTGATACGATTTTTACATATGGAATGACTGATTGGGAAGGAACTATATATGACAATGGAGTTTTTAATTCGGCAATAAACGATCTGGACTCCAAATTTCCACATCCTTCAACAAAACGGAACCATTTTGTTAACTCAGAGTAATCCTTGGTAGAAGGTTACATATCTCCTTTTAGAAATGAAAACTATCATATTTCTAATTTTTGTGAAACTCAAAATAAATAAAATCGAGAATTTCTATTTCTATCATTCAAATTTACATATAGTAATTCAAAGAACATGTGGACATGGAAGAGAAAATTCACAATATTAAATAATATGTGCACTTTCTAAGTTCTGATTCAAGTAAAAATAGTTGTTGTTACAATGCCTATTCACAACTTGATACGAAAGCACAACAGTGGAGCCCATGACTTTATGACATTTGACGATAATCTTGATCTTATTCCTGATTGATGGCAGAAAAACTTCAAGCTACCTGTGAGATGATGAACCAGTTCATGGGACTGTAGGCAGGACCGGCCTCAGGGCAAGGCAACCAAGATGGCCGCCTAGGGCAACATGGCGGAGGAGGGCAACATTTTCAATATCCATGTTTGCAAATAGTCTGTTGATATTAGTAAAATGGCAAAAATTTTAATGAGACTGGTTAGTCTAGTGGTTTGTTGTATCTTTCCCGGCCGGAGAACCTGAGTTTGAGCGTGACTTCTTGCAATTTTTATTTTTGTTCCCCTTCCATCCTATGTTTTGCCTAGGGCGACTGAAGGTTAAGGGCCGGCTCTGACGGTAGGAAATAACATGATGCTGGTTTGAGATATCACAAGAGATGGAATTAATTACAGCGGGATTTCAAGTGGAGAATTGCTTTTAATCTTCACAACGACCTAAATTAAGGTGCAGAGTACGAAAACAGTGGAAACAATACAGGGTGCAAGTGCAAATTTCATAAACACGGATAACCAAAAGGCCCACAAAAATCAGAAGAAATCGAAGACAGAGTATCAGAAATGCAGCTGCAAACTCGCTGGCATCTCCCAGGTTCACCGTACGCTTCCGTACTACGGTCGTAGATTGCCACGTGCCTTCACCTCGTATAGGACCCACGCGACATTTGAGAATTAATGCAGAGGATCTTCTGCACAATACGAAGTTTGCAGTGTTGAAGCCAGCTATTGTTTCTTTCTCGCTCGTGACGTCAACAAAATCGTTTTATTTACTATTATCCAGCTGTCTCCTCTTCACTAACAGGTTCTTATAGCGACGCATCGTTATTAAAGTTTTAAACTAGTGCATTATCCACACATCCTCCTATTTTCAGTCATTTTCTCTCATTTATATAGTTGATTCATTCTTCTTTGCTTTTAGGACTTAAAAACTGCGGTTACAGCGAGAGAAGAATTCGAAGAATTCAAGGAAGAAGGTATAATTGGAAAATTTTACTCATAAGAACAAGTGAATAAATTTTACCATGCAAATGCTTACATCGGCATTTTCATTCATAATTTGATCATAATCAAACTACTGTTATGCATATGTGTCGTGAATTTTTTTTTTTTTCTGCTTTAATAATATCATGTTATATTTTAAAGAAAATAGACAGCAGATAACTGATTTTATTGAGAAACTCTATCTTACATCATTTTTTAAAATTTTCCTACATGTTACTTTAGAGAAAAAAAAATAGTGTTAGGTCAAAAGAAAATACTACTTTAAGCAAATGTATTTCAGGAAAAAGAAAAAACGAATAATTTAATATATCTAATAGAGAATGTACGACACGAGCTGACTTGTATTTTTTGGGTTTTGAATGATATTCAAAGAATCAAGTATTAACAACAAAACTTAAAAATATCAACATCGTATAGTCTGAATTATTTGGTTTATTGCTATACTATATACATATATTTAAAGCAAGTATGATCATAACTGTTTATCATTCTACGTACTGCTTCTGAAAAATGGAGCACATAAAATAATATAAAATAAAGTATATCCCTAATGCATTGTATATGATATATTATATATTAAATAACGTAGCTGCATAGAAGCTCACTCCAACAGCCAGTTACAACCTACTATAATAAACAGTGTCTTCACTTTCCTATCTATATATACACTCTCTCTATCCACTTGAACTTTCAATTCATCTGATCATTTCAATTTCAATACCTACGTACATCCACTAATTATATCAACACAAGCTAGCATTCAAATTATGGAGGAGACTGCTAACTCAACCGCTTTAGCTACGTACATAGGAGTACGTAAAAGAAAATGGGGGAAATGGGTATCCGAAATCCGGGAGCCCGGTAAGAAAACCCGCATCTGGCTCGGCAGTTTCGAGACGCCAGAAATGGCGGCCGTTGCGCATGACGTGGCAGCATTCTGGCTCAAAGGCCAAAACGCGCGTCTGAACTTTCCGGACTCAGTGGGCCAGTATAGGAAGCCCCTGAGTTCGGATCCTAACGACGTGCGATCCGCTGCACTGGAAGCTGCGTTGGAAGTTAAGTTACGGCAAGGTGAGGACGATTTGGAGAAGATGCTGTGTGTAAGTAAACCTGCTGGTGGATTGGAGAGGTTAGGGTCTGGGCCGGGTATCGGGTACGGTGGGAACGATTGGGGCCCGGATTCTCCGAAGATGTGGAGAGAACTAGCTGAGGCAATGTTGGTTTCTCCGCCGCAGTTGAGTTGGCCGGAGGTGAATCATGAAGTGGAAGCTTTGGAGCATGGGTCGACTAATTTGTGGGGTCTGTTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010930490.1	2.2e-40	ethylene-responsive transcription factor ERF038
Swissprot	Q1ECI2.1	6.8e-26	Ethylene-responsive transcription factor ERF023
trEMBL	A0A6I9RYN2	1.6e-40	ethylene-responsive transcription factor ERF038

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G71450.1	63.53	6e-26	115		Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g455835	AT1G71450.1	85	31	0	161	245	22	106	63.53	6e-26	115
g455835	AT5G25810.1	123	52	1	122	244	2	117	52.03	2e-25	113
g455835	AT5G11590.1	102	46	0	143	244	31	132	54.90	2e-24	110

Ortholog group

Species	Genes
Allium cepa	g447330.t1; g447367.t1; g447380.t1; g455835.t1
Allium fistulosum	AfisC2G08695; AfisC2G08700; AfisC4G05694
Allium sativum	Asa5G04686.1
Arabidopsis thaliana	AT1G33760.1; AT1G71450.1
Oryza sativa	LOC_Os02g35240.1; LOC_Os11g13840.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	163	207	38.0	1.4e-09

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network