result

Gene information

Detail information of g456149


Location
GeneChrStartEndStrand
g456149Scaffold_82951:HRSCAF_4660371637924863+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020273956.11.6e-124cyclin-dependent kinase D-1-like
SwissprotP29620.12.0e-119CDK-activating kinase R2
trEMBLA0A5P1ECV01.2e-124[RNA-polymerase]-subunit kinase

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G18040.152.726e-106 380AT;CDCKD;3;CAK2AT;CDKD1;3cyclin-dependent kinase D1;3

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Ortholog group
SpeciesGenes
Allium cepag334672.t1; g456149.t1
Allium fistulosumAfisC5G03180; AfisC8G01031
Allium sativumAsa1G04009.1; Asa4G04102.1
Arabidopsis thalianaAT1G18040.1; AT1G66750.1; AT1G73690.1
Oryza sativaLOC_Os05g32600.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00069.22PkinaseDomain36156106.31.5e-30
PF00069.22PkinaseDomain15923652.05.6e-14

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000428CDNA-directed RNA polymerase complex
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0051726Pregulation of cell cycle
GO:0003824Fcatalytic activity
GO:0004672Fprotein kinase activity
GO:0004674Fprotein serine/threonine kinase activity
GO:0004693Fcyclin-dependent protein serine/threonine kinase activity
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005654Cnucleoplasm
GO:0005667Ctranscription factor complex
GO:0005675Cholo TFIIH complex
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006464Pcellular protein modification process
GO:0006468Pprotein phosphorylation
GO:0006793Pphosphorus metabolic process
GO:0006796Pphosphate-containing compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0016301Fkinase activity
GO:0016310Pphosphorylation
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0016591CDNA-directed RNA polymerase II, holoenzyme
GO:0016740Ftransferase activity
GO:0016772Ftransferase activity, transferring phosphorus-containing groups
GO:0016773Fphosphotransferase activity, alcohol group as acceptor
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0030880CRNA polymerase complex
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032806Ccarboxy-terminal domain protein kinase complex
GO:0032991Cmacromolecular complex
GO:0036211Pprotein modification process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043233Corganelle lumen
GO:0043412Pmacromolecule modification
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044464Ccell part
GO:0044798Cnuclear transcription factor complex
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0055029Cnuclear DNA-directed RNA polymerase complex
GO:0060255Pregulation of macromolecule metabolic process
GO:0061695Ctransferase complex, transferring phosphorus-containing groups
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070985CTFIIK complex
GO:0071704Porganic substance metabolic process
GO:0080090Pregulation of primary metabolic process
GO:0090575CRNA polymerase II transcription factor complex
GO:0097472Fcyclin-dependent protein kinase activity
GO:1901564Porganonitrogen compound metabolic process
GO:1902494Ccatalytic complex
GO:1902554Cserine/threonine protein kinase complex
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1902911Cprotein kinase complex
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1990234Ctransferase complex
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140096

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K02202CDK7; cyclin-dependent kinase 7EC:2.7.11.22 2.7.11.23 Basal transcription factorsko03022
Nucleotide excision repairko03420
Cell cycleko04110

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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