result

Gene information

Detail information of g468242


Location
GeneChrStartEndStrand
g468242Scaffold_84151:HRSCAF_467237208531211842+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020264346.12.2e-125zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE5.12.6e-67Zinc finger protein CONSTANS-LIKE 9
trEMBLA0A5P1ETM81.6e-125Zinc finger protein CONSTANS-LIKE 9-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G07650.149.142e-97 353BBX7;COL9CONSTANS-like 9

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag435375.t1; g468242.t1
Allium fistulosumAfisC6G04046; AfisC7G01252
Allium sativumAsa3G03846.1; Asa8G03016.1
Arabidopsis thalianaAT3G07650.1; AT3G07650.2; AT3G07650.3; AT3G07650.4; AT5G48250.1
Oryza sativaLOC_Os02g49230.1; LOC_Os02g49230.2; LOC_Os02g49230.3; LOC_Os02g49230.4; LOC_Os02g49230.5; LOC_Os02g49230.6; LOC_Os06g19444.1; LOC_Os06g19444.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF06203.11CCTMotif35639860.41.1e-16

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0016020Cmembrane
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0007623Pcircadian rhythm
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0048511Prhythmic process
GO:0048519Pnegative regulation of biological process
GO:0048579Pnegative regulation of long-day photoperiodism, flowering
GO:0048580Pregulation of post-embryonic development
GO:0048581Pnegative regulation of post-embryonic development
GO:0048583Pregulation of response to stimulus
GO:0048585Pnegative regulation of response to stimulus
GO:0048586Pregulation of long-day photoperiodism, flowering
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0051093Pnegative regulation of developmental process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051241Pnegative regulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071944Ccell periphery
GO:0080090Pregulation of primary metabolic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000026Pregulation of multicellular organismal development
GO:2000028Pregulation of photoperiodism, flowering
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2000242Pnegative regulation of reproductive process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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