result

Gene information

Detail information of g47269

Location

Gene	Chr	Start	End	Strand
g47269	Scaffold_28010:HRSCAF_246564	77484	79971	-

Sequences

CDS

Protein

Gene

>g47269.t1
ATGAGTGTAGGTTTAACAATATCTCCTAACGGCACTCTTTCTATAAATGCTAACGGTACCTCTTCCATCATTTTGTTTCTGCCCTCTTCATCCGTACCCAATCCTATAGCACAGTTATTAGACACTGGAAACTTCATTGTTCGAGATTCTAAAAATGATCAAGACAGCATGTACGCATGGCAAAGTTTCGACTGCCCAACTGATACGCACCTGCCACACATGAAGCTAGGCTGGGACCTAACTAGGGGCTTGGCCCGTAACCTCACTTCCTGGAACTCCGAATCCGACCCATCTCCAGGCTCCTACTCTCTTGCCATAGACATCCGCGGCGGTCACGAACTCTCCCAATTCAACGGTGCTGAATGGGTTTGGAGATCTGGAATGTGGGACGGGTTAGAATTTAGCGGGTTACCCGACTTCAACACCTACGGTGACTACAACTTAACATTTACAAACACCACTTCAGAAATATCGTTAGAATACAGAATGACCAGCCCTTCAACGTTTGCAAGAACAGTAATCACGTACACTGGTTTTATGAATAGGTACATGTGGGTCAATAGTTCGGGTGCATGGAACTTAATATGGTCTGGGCCCACTGGTAGGTGCGATAAGGATAGTGTATGTGGGGTGAATGCCAACTGCAACCCGGGCACGTTGCCTGTATGTGAGTGTTTTCATGGGTTTGGGCCTAAAAGCCCAGCGGACTGGGCTTTTTGGGATGCGAGTGAGGGGTGTGTGCGTAGGACTGGGCTGGACTGTAGGAATCGGACTGACCTATTTTTCAAGATGGAGCATGTAGTGCTGCCTGATACATTAAGTGCAACTATTGATGCAAGTATTATAAGTCTCGATGACTGTAAAGAGAGGTGTTTAAGAAACTGCTCTTGTACTGGGGTTGCAAATACAGATGTGCGTTCTGGTGGAAGTGGTTGTGTTATGTTTGTTTCTGATCTTATTGATGTTGGTGATCTTGGGAATGATGGTCAGGATTTCTATCTCAGGTTGGCTGCAGCTGACGTAGGTATGTGGCAAAAAATGTAGTTTTTTCGGTTATTACCGTTACTAGACCCCAATGCTTGAATATTATCTCTGCCTTCTAAAAGATGTTCAATTTTTTTTCTATCTTGATACAAATGGACAAAGTGAAACACTTTTTTGTCCGTTTTGTAGAAGGTGATGATGATTGATGAAAAGATGCAACTATTTGTGTTAAAACAGTACGTGTGTTCGAAAAATATGAGTTGTGAGTTTCAACGGCCATATACAATCTTGACCCCTGGTTAGGCAAAAAGTGTTTGAATGGACATAATTTAAAATTTATCTCATGTTATGAACCTACAATCTTTACTAACACAACGTATCATCACTATTATCTACAAATAATAATGTGGAACTAGACATAGTCGTGAAATGAAGGAAAATATTAAATTTTCTATGGTCAATTTTAGAATAGTATTATCTGTTTTAATATTAGTTGAGTCACATTTTAAAACACATTAGGCAGCTTCCTCCCTTGTAGTTAAGTACTATTTTTTTCTTCTTCTTATGTTTAGAGCTATGAAGCCACATTACATAGTTTTTCTTAATGGTGGTTGAGTTTGAAACAATGAAGTACTTTTCCTGTCTGTCAAGGAGTTAATGTACTATTAATACTTGATACAATGTTGAAATTATTATTGATATGATTGACATAGCGATGTACCTTTAAAAATATATTTTTGACCAAACAGTTGCCAGCATCAACTCATAATTTATATGCATTATTTTATTTTTTGAAATCTTCCAGGTGCACAACTCAAGCAACCATTTTTTATTTCTGTAAATAATAATCGAAGATCAACACAGGAATAGAAACTTTTCATGTTACGAAACCAGACATGGATACATACATGGGATTTTTTAGACTGGGTCTCGGAAATGCATGATTTGTTATGATTTAATTAGATCCCACTAACTGCAAAAATGTTCCACCTACAAATGATTGAATCAATCTCTTTTTAAGTTAGAAGCTACTGTTCTTATTTTCATTCGCTTTCATCACTGTAAAAGTACCGTAGAAATAGGTTCTTATTATCCAACATATTAAATTCTCTTCAACCACAAAATGTGTTTAATTCAAAAATAAAATAAAATTGATACCTTAACAGCTATGTCGACATCACAAAGCAATTCTAGCAAGAAAGAGAGTAGAATCATTGCAACCACGGTGAGCCTTGTCATCGGGGCTTTATTGCTTGCTGCATCATCTACTGCATATGTAGAAAGAAGAAAAGAATTAGAAAAGGTACGCTTGCACAGTGATCGGTTTTATATGTCATCTGATATGTATATCTACATGTGAATATCTGCAATTTTTTAACATCGTACGAGGGAAAATAACATCTGAGATTCATTATAATGTGGATGAGAACATTTACGTATGATATAGATCGATATAATGCAGAGAACTGGAATGAGGAAAGCAAAATGGAAGATGAAGATCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK74669.1	1.7e-106	uncharacterized protein A4U43_C03F8910
Swissprot	O81905.1	9.6e-75	S-domain-1 (SD1) receptor kinase 8
trEMBL	A0A5P1FCT7	1.2e-106	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G21380.1	37.14	1e-77	286	ARK3;RK3	receptor kinase 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g47269	AT4G21380.1	385	230	6	2	384	93	467	37.14	1e-77	286
g47269	AT4G27290.1	362	210	5	1	356	86	441	38.67	9e-72	267
g47269	AT1G65790.1	389	222	8	8	384	90	461	35.48	1e-66	250

Ortholog group

Species	Genes
Allium cepa	g140573.t1; g140630.t1; g183911.t1; g183912.t1; g184314.t1; g47269.t1; g491707.t1; g491709.t1
Allium fistulosum	AfisC3G04819; AfisC3G04821; AfisC3G04823; AfisC3G04827; AfisC3G04832; AfisC3G07037
Allium sativum	Asa0G02522.1; Asa2G03974.1; Asa2G04276.1; Asa2G07482.1
Arabidopsis thaliana	AT3G12000.1
Oryza sativa	LOC_Os04g54130.1; LOC_Os04g54140.1; LOC_Os04g54180.1; LOC_Os07g36544.1; LOC_Os12g15550.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	4	93	59.1	3.3e-16
PF00954.17	S_locus_glycop	Domain	124	233	91.1	5.4e-26
PF08276.8	PAN_2	Domain	254	322	66.1	1.9e-18

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005488	F	binding
GO:0005516	F	calmodulin binding
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network