result

Gene information

Detail information of g472718

Location

Gene	Chr	Start	End	Strand
g472718	Scaffold_84740:HRSCAF_467826	106015	107456	+

Sequences

CDS

>g472718.t1
ATGGGAAACTATGAAGACGAAGCAAAGTCCCCTTCTGCTCGAAAATGGTCATCGCTTTTTAAATCATTGTCGCGCAACTTGGGTGAGTATAATCCTCGTTCTTTTGAAACTGAGGAGGTAAAAGGGGTTTTGATTCCTCCTCCTATGGTCATTCAAGCTGGCAAAGATTATTTTGCTGACTATCTTGTGGGGTTCTTCCTTGAATCGAATCTGCCATACCATCTTGTTCAGGCTCATTGTAAGAATCAATGGAAACTCTCGAGTGGTCTACAGGTTCAGTTTGATAACAACATGTTTTTCTTTATGTTTGCTAAAAAGGAGGAACGACAACTTATGGTTGAGGCCGAGCCAACTTTCATTGAGGGTAAACCACTAATTATTACTTCTTGGAGTAGATCCATTGATAGTGTTAGGTATCAGATCGCTGGCTTGGTTGGAGAGCTTAAGTATTTTGATTCAAACACTTTGGCTAGAGGTAGGATAGTATATGCGAAAGCTATGATTGAAATTACCCCTTCCAGGCCTCTTCCTTCCAAGCTTAGAGTATGTCCGTCTGATGGTCAAATAGCGGAAATTGTTGTTCACTATGGATGGAAACCTGATATATGTGAGATTTTTCACTCTTTTGGTCATGTGGCGCTCACATGCAAGCACCTTTCTCATCCTGATTATTCTAATGACCCTCCTCTTCCTATCCCAGAAAAGATCCCCTACCTCGGCCCCCGGTCAGACACCGGTCCCCCTCCTGATGTCCCTGTTGAGATCTATCAAGTCCCTATTTGTAAATTTAATGTTGCTCCTTCCACTGTCAATGGTGGGTATTATATTGTTCCTGGTGGAAATGGAGAGAGGAGGAGGATGTTATTTTATCATGTTGTTGGTAATGGCCTTATTCTTACATATAATGGTGAGGATGGTGATGACAATAAACTTATTTTCAAGCATGGCACTTGGGATCGTCATTATCTTTACTCCTCTGATTCTTCGGGGTTTGATCCAGATATCGCGACTCATTTCTCAGGTTTTCTACATGTTATGGGGACTAGTCCCGTTGTAGATGATAGCGGTCCCCTTTCTTTGGAGGCCGTCTAG

Protein

Gene

>g472718.t1
ATGGGTTTTCTTTTTCAACTTTTAACTTCATAGAAAGTTTTGTTATATGGTGGTAAGACTTCACTCCAAGTTTGAAGTGATTTGGATTTAATTTGCAAAAAAAATTCTTTAGGAAACTATGAAGACGAAGCAAAGTCCCCTTCTGCTCGAAAATGGTCATCGCTTTTTAAATCATTGTCGCGCAACTTGGGTGAGTATAATCCTCGTTCTTTTGAAACTGAGGAGGTAAAAGGGGTTTTGATTCCTCCTCCTATGGTCATTCAAGCTGGCAAAGATTATTTTGCTGACTATCTTGTGGGGTTCTTCCTTGAATCGAATCTGCCATACCATCTTGTTCAGGCTCATTGTAAGAATCAATGGAAACTCTCGAGTGGTCTACAGGTTCAGTTTGATAACAACATGTTTTTCTTTATGTTTGCTAAAAAGGAGGAACGACAACTTATGGTTGAGGCCGAGCCAACTTTCATTGAGGGTAAACCACTAATTATTACTTCTTGGAGTAGATCCATTGATAGTGTTAGGTATCAGGTATTATCTATTCCTGTTTGGGCGCACTTCTCTCATATTCTCTATGTTGTTCAATCTTTGCTTGGATTGAATTAGATCGCTGGCTTGGTTGGAGAGCTTAAGTATTTTGATTCAAACACTTTGGCTAGAGGTAGGATAGTATATGCGAAAGCTATGATTGAAATTACCCCTTCCAGGCCTCTTCCTTCCAAGCTTAGAGTATGTCCGTCTGATGGTCAAATAGCGGAAATTGTTGTTCACTATGGATGGAAACCTGATATATGTGAGATTTTTCACTCTTTTGGTCATGTGGCGCTCACATGCAAGCACCTTTCTCATCCTGATTATTCTAATGACCCTCCTCTTCCTATCCCAGAAAAGATCCCCTACCTCGGCCCCCGGTCAGTATATGGGTTGCTAAGTCGTGCCCCACTTTACTTGAGGACACCGGTCCCCCTCCTGATGTCCCTGTTGAGATCTATCAAGTCCCTATTTGTAAATTTAATGTTGCTCCTTCCACTGTCAATGGTGGGTATTATATTGTTCCTGGTATACCTTCTGTTGCTACTATCATCCCATCTCTTGTGATTGAGTGGAACGCCAGAGGGAAGACTTGAGTTCATTTGAGTTCTGAGATGCGATATAGTCCAGGGTTTAATTGTTATTATATGTTTGTAGGTGGAAATGGAGAGAGGAGGAGGATGTTATTTTATCATGTTGTTGGTAATGGCCTTATTCTTACATATAATGGTGAGGATGGTGATGACAATAAACTTATTTTCAAGCATGGCACTTGGGATCGTCATTATCTTTACTCCTCTGATTCTTCGGGGTTTGATCCAGATATCGCGACTCATTTCTCAGGTTTTCTACATGTTATGGGGACTAGTCCCGTTGTAGATGATAGCGGTCCCCTTTCTTTGGAGGCCGTCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	KAF5204973.1	2.8e-20	zinc ion binding / nucleic acid binding protein
trEMBL	A0A835HW70	4.8e-22	DUF4283 domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
-	-	-	-	-	-

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
-	-	-	-	-	-	-	-	-	-	-	-

Ortholog group

Species	Genes
Allium cepa	g104042.t1; g143750.t1; g154587.t1; g174307.t1; g181847.t1; g184893.t1; g189195.t1; g215087.t1; g274828.t1; g305025.t1; g307583.t1; g35232.t1; g389355.t1; g394532.t1; g406331.t1; g472718.t1; g531167.t1; g70517.t1; g7101.t1; g74151.t1; g76547.t1
Allium fistulosum	AfisC1G03029; AfisC1G08577; AfisC1G08623; AfisC1G09123; AfisC2G01184; AfisC2G01463; AfisC2G07325; AfisC2G08418; AfisC2G09318; AfisC3G03321; AfisC3G04748; AfisC4G00067; AfisC4G00533; AfisC4G01303; AfisC4G01888; AfisC4G01990; AfisC4G02253; AfisC4G05420; AfisC4G06277; AfisC5G01290; AfisC5G03475; AfisC5G05147; AfisC6G00869; AfisC6G03918; AfisC6G04125; AfisC7G00709; AfisC7G00771; AfisC7G04011; AfisC8G00571; AfisC8G04811; AfisC8G05333; AfisC8G05509
Allium sativum	Asa1G03989.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF14111.3	DUF4283	Domain	55	134	33.6	2.1e-08

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20183	VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39	EC:-	Autophagy - yeast	ko04138

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network