result

Gene information

Detail information of g483741

Location

Gene	Chr	Start	End	Strand
g483741	Scaffold_86036:HRSCAF_469122	506562	511643	+

Sequences

CDS

Protein

Gene

>g483741.t1
ATGGAGGAGCCTCTTGCCTCCCTGTGCCCTGGTTGTCAACTATTGAGATGGAGGAGCCTGCTGCCTGCCTGTGCCCTGGTTGTCAACTACCGAGATGGACGAGCCTGCTGCCGCTTGTCTGTGCCCTAGCTGCTAAGATGAAGTCTGCCTGAAGAGGAGATGGAGCTGCCTAGTTGGGTCGTCGCTCGCTGTTTCGTCGGTTTGTGAATTGCGGATTCACGATTTATTTATTTATTATTTTTGTTGCATCGCAGGTTGAAAATACTAAATTTAGCGTCCTAATTGTTTTGAGACCCTAGGCGGATGCTTCTTCCACTTTAGGGAAGAGCTGGGTCTATTAATAAGTAAATGATTTTATATGGTAGCCATTACCTTGTGTTTTTCAAGTTGCTTCTAGTGATGGACTATATCTAAATCATTATCTTTTTCATTTTTAAGTTCAAACAATGGAAAACAACCATGATTTTAAGATACGAATCCACCAATGGTGGCAGAGATCTCTCAAGGCTTCTAAAATTTTGAAAACGATTCCAATCTATTTTCAGCCACTACCTTTTTTTCCACCCCTTTTCATTTTGTAATAAAGAAATCTCGTGGTCCTCTTCCTCTCATTTCCAATGAATCAAACTCAATCAACCACGTCAGCAGCACGTAGGCTCTTTTTCCAGTCCATGTGGACCTACCTCTAAGAACTGCTTCAGATAAATTATATATTTTTTTTGTTGCCGTCGTCGTCTGCTTCTTTTTTTTTCCTCCTTACTTGCTTCTTTTGTCTGTATTGATTTCTTCGCTGTTTTAATTGCTATTTATTTAGAGGAGGCGGATGACGAGACTGAGATAGAAGGAAGAAGAACAAGATGCGGACGATCTGCGATGTTTTGCGAGAATGCGGCTGCTGTGTTGTTTTGTGCCGCGGATGAGGCTGCCCTTTGTAGATCATGCGATGATAAGGTAACTTTTTATATATTGTATTTTTAGGGCTTTATTATTTGTTGATTTTTGGAATACCTTCCTGTTTGTGGATTTGGTTTGATAGATGCAATTTTTAGGCGATTAGGTTACGCTACTACTAATTTGGATTTGGATATCAGAAAGTTATGTGGGAATATGTTATGGAAATTGTTTGAGTAAAGTTGAATAGATATTGTTGGCCTCACTTTGATTAAGCTTTCTAAAAGTATCAAGGCATCATAAGAACGGTGGCATATAGGTGAAAAGCATATAAAGTAAGTAGGCACTTACCAATACCGAATATTGATGATTATCCCAAATCATTGCAGCTTATGTGTCTAATAATTCTCGAAAGAAACTTACATATGGTATTTTAGAAATGTTGAAAATAAGAAATGATGAACGCTGTCACTGTGGAATTATTGGTAGAAGAATGTATAGCGTTATGGCTTATGCAATAAAATAGGAGATGTATTCCATCTCCAGATACAAGAACTTTGGATGGTAAAACAAGGACTTTAGAGATGTTGAATGGATTTCCAAGAAGAAGACTGGTGTGGATGAACGGGTGAAAACATGTAAAGCAACGTTTATGACTATCCTTATGTTCAAAGCTTGAGACGTCATGGCCCCACCACTTTAATCACTGTTATTTCTCCATCATTTGTTATGCCAATTTTTTTTGGATTGAGCTATTTTTTATTTAATCTTATAACTTTGGAAAATATTATATCATTTCAAAAATTGCCCTTTAAATTCATTACTCAATGTGTATGTGATTGAAAGATTCAAAAAAATTCAAAATTTTGTGTGTATGAGCTACATTATGATAATGATGTGTAAATAATATATTTAAATCTAATAGTTGTTGATATGAAAAATCTAACAAATCCCTCCTATTTATCCACCTAAATCCCCTTCAGACTCCTTTTGCAAAATGTTATAAGGTTAAAATGAAATTTATGTAGATATGTTACATTAGTAAGACGATCTATGGAAAATTTGGAATTATATCCCCTTTAAAATTGCCTTTTAAATCAATGGGGGGAAAACCAATATTTATAATGGTTCATACCAACTGGCAATTCCGTAGGAATTCGAAGTTTCTAAACGATTCCAAATTTTGAATATATGATTTTGCTAATGATTATAATATATGTATGTACAAAAATTCATCTCAGTCCAAAATTTTATTGCACAAAAAGAAAGGGATTGCCATCATTTTTGTATTTCGTATTTTTGTCCAACTCGTTTTTCAATATCTATGATTTTTTTATAGATATGATTTACTTGTCATGAATTGCCAATAACGATCTTATTCCAACATTTATTGTCCATTAAAAGTTGGTACTTCCGCATCAATGATTTAGTAACTATTTTTAATGTATAACATGCTGCGTAGTTAATTTTGATGGGTTGGAAGTGGTGGGATAAGGTAATTTTTTGCAGAAATGATATTAATAATAAATAAATCATATCTAAAAAGGTTATCATATACAGATAATTGTAGATATTGAATATGAGCTGGGGACAAATCGGGATACAAAAAAGACGGGATGCGGATCCCTCCTCTCATTAGATCCAACTTAGTCATTTATGGATGTACATCAGCGTTATTTGAAAGTACGGATGCTTATAGTTTATATGCCAAATCCAAATGTTATTTTGTTGGACAGTTTTTTTGTCTTAGATTTTATCCAAGTACTTGCCTTTTATTTCAATTTTAAATGCTTTTGCTCAATTGATTGATCGCTGCTGATTACGAAGATATCATTTAGTAGCCTAGTAGGCCTGATAATCAAACATAGCAGTTGTAGGTGGTCTAGGAAGCTTTTGGTTCTATTGTACATGAACCTGTTTTTGCGAAAATAGCTCTCAAGTTTCGAGTGGGATCTGTATGTATATCTGTAAGGGAATCAGCTAGAAGTCTAAAATAATTGTATGGATCGTAGAAACTTGTTTTTTAAATTTGTGAAGATTAGAGGGTGGTATTTGTTTAATAGCTGAATATGAGAGGAAGCAATTTACACCTAGTATGCTGATAATTGGTATCACAATGTTTGAATTAAAATTTGTCATGTTATATTTTGTTGGTTTACTGTTTGTCGTATTTAGAACTGATATCACAATGTTTGAATTAAAATTGTCATGGTATATATCTATAAAAAAAAAACTAATTGTTAATTTGGTAGTGTTAAAACTATTGAAAAAGCTGCTACAAACTTTTTTTGATTCATCACAGATTAGGTATCAAAACCTAACCCACACACCTTTCATTTCCTGTTTGTTCAACTTATGGGTCATGTTTTCAACGCTTTTTCCCTTGCAAATCATTTCATAAACATAACTGCTTCACATACATGGAAACAACGTTTGGGACGTCTCATCCTACATCAGATAGACACCCAACATAGAAAACACTTATCCTTGACAAAACCGAGAGCTGAAACCTTAAGGTACAAGCAAGCCTTTCACCCTAAGCTTAACTGAATAACATAATCAATTTGAGATGTACAACTTGGACACATGTATCTTCCTAGATCTCATTAGTACCAGATATCCAACATTAAATTTCTCATCTTATACAACGTCGAAAATTTTGACCTAGTCAAACAGTATGCTATCCTAAGCTATTCTGTATGCCCATACACTAATCAGGTACATGACAATTGGACCAAGCCTGCATATGTCTAGCAAAATATTTCATTTTCAATCAATTAGACTACTCTTTAAGGTTCTGTGGTTCAGAAGGTATAATATATCAAGTTATAAGTTAAAAAGGCCACATATCAGGCTTCAAGACTGTAAATAACATCTTTTCACATCTAACGTTCTAAAGTTTGGTTTTAGTTGTGTTTTCTGCATCGGCGTTCAGTTTCATGGTGCATTTTACATCCCAGAAAGAAAGGATGAAGAAAAGGAGAAAGTTTCACTATTCTAAAAGTTGATTTATAAAACAGTTGTAAACAACATAATTATATGTTTTAGTAATCTGGCAATGTGATTTTGTTCTTGTTTGCTTTTCAAATAAGCAGCTTCTTTTTTTCTCTAAGGTGAAAATCTTTCAGGTTCACATGTGTAATAAACTTGCAAGTCGGCATATACGAGTAGGACTAGCTGATCCTAGTGAAGTTCCTCGCTGTGATATTTGTGAAAATGCACCTGGTTTGTTAATAATATCTTGTCTCATGGTATTTTCCATACTAGTTTTCAACTTGGATAACCTTACTTTTGGAGTGTGCATTTGCAGCCTTTTTTTACTGCGATATAGATGGAACATCACTTTGTTTGCAATGTGATATGATTGTACATGTTGGGGGAAAAAGAACTCATAGGAGGTACCTGTTGTTAAGGCAGAGAGTCGAGGTTTGTAAAACATATTTTCTAAAAATTTACTCCCACGACTTCATTTAAATGTGCATGTGCATTTCCTGAATTTGTACCTGTACATTTTGAAAACATGCATGTACAAATTCAGAAAACGTACATACTTATTTTCAAGATGTACATGTATTGGCTTGAAAAAAGCCTATATCTTCAATAAGTTCGAGTTAAGGCCTATTGGTGACATAAGCTTTTCAAGGGCCCTAATGGTCAAAGCTCTATGTTTAAGTAGGTGCATCGATGTGTGGATATAAAGTATCAGTGACTCAGTAACTATTATCTTCTCTTTATTATGATATATATTTATAACTTTTCTCATGCAAGAAACTCAAACTTCAAACACTGTTATTATCTACTTAGTTTCCAGGTAATAGACAAGGTCAAATAGACGATGCAAACATGCAATGCAAGGACCAAACTGAAAACGGACAGGTTCAAAATCACATAGTTAAGCAAAACTTACAGAACAGCAAGGCACAAACTGTTCCAGAAATCGATGGCGATGATCACGTAAACTCAAATATGATCGATCTTAATACAAGACCATACCGAAACCTTGGTCAGGCATCAAATTCTAGGGTATGTATGTTCATTGATTCCTGTAGTTATAATCTCAAATAGATTTTCAAAGCATTTATGCTTGTTTTACATTTTGCATTTGAAGTTACAAATTTGTCTAACTATAAGATTTTACTTTAGAGTCAAGGCATGGATTACCAGAGCAGCAACCACGACAATGGTTCATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244312.1	1.5e-73	B-box zinc finger protein 19-like
Swissprot	C0SVM5.1	5.9e-51	Protein SALT TOLERANCE HOMOLOG 5
trEMBL	A0A6P5HLR5	6.9e-65	B-box zinc finger protein 19-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G21320.1	56.74	4e-53	204	BBX18	B-box zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g483741	AT2G21320.1	178	59	2	62	239	8	167	56.74	4e-53	204
g483741	AT4G38960.1	179	58	2	62	240	8	165	55.87	5e-52	201
g483741	AT4G38960.3	222	58	3	62	240	8	208	45.05	8e-46	180

Ortholog group

Species	Genes
Allium cepa	g210558.t1; g238571.t1; g383132.t1; g483741.t1
Allium fistulosum	AfisC2G00811; AfisC4G01926
Allium sativum	Asa2G04527.1; Asa4G03345.1
Arabidopsis thaliana	AT2G21320.1; AT4G38960.1; AT4G38960.2; AT4G38960.3
Oryza sativa	LOC_Os09g35880.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	106	146	27.8	1.8e-06

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000988	F	transcription factor activity, protein binding
GO:0000989	F	transcription factor activity, transcription factor binding
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009266	P	response to temperature stimulus
GO:0009314	P	response to radiation
GO:0009408	P	response to heat
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009637	P	response to blue light
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010099	P	regulation of photomorphogenesis
GO:0010100	P	negative regulation of photomorphogenesis
GO:0010286	P	heat acclimation
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0033554	P	cellular response to stress
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0034605	P	cellular response to heat
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048519	P	negative regulation of biological process
GO:0048580	P	regulation of post-embryonic development
GO:0048581	P	negative regulation of post-embryonic development
GO:0048583	P	regulation of response to stimulus
GO:0048585	P	negative regulation of response to stimulus
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051093	P	negative regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0070370	P	cellular heat acclimation
GO:0071214	P	cellular response to abiotic stimulus
GO:0071478	P	cellular response to radiation
GO:0071482	P	cellular response to light stimulus
GO:0071483	P	cellular response to blue light
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000030	P	regulation of response to red or far red light
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0104004
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network