result

Gene information

Detail information of g48390

Location

Gene	Chr	Start	End	Strand
g48390	Scaffold_14037:HRSCAF_152351	156694	164809	-

Sequences

CDS

>g48390.t1
ATGGGTTGCTTTCCATGCTTTAAATCGTCGACTCGTTTTAAGAAAAAAAGTGAATCTGACGCCACAATTAAACATGGAGGAGATCTGAAGAAAGAAGCTTCCTGTCAGAAGTTAACTAAGCATCCTGCTGAAATATTGAAATCGCAAAGTAATTCGGAGACCAGGACAGATGTAATAATTAACACAAATGGAAGGAAAGCCCACATTTCAGCTAGAACATTCACATTCGGTGAGCTTGCTGCTGCTACTCAAAACTTTAGGGAAGATTGCTTGTTAGGTGAAGGCGGTTTTGGACGTGTATACAAAGGCTGCTTAGAAAATGGACAAGTAGTTGCTGTAAAACAGTTGGATAGGAATGGACTTCAAGGAAACAAGGAATTTCTTGTAGAGGTTCTTATGCTTAGCCTCTTACACCACCCTAATCTCGTGAATCTTATCGGTTACTGCGCTGATGGAGATCAACGTCTTCTTGTGTATGAGTTCATGCCTTTAGGATCGTTAGAAGATCATTTGCATGACATTCCACCGAGCAAAGAGCCTCTGGATTGGAACACACGCATGAAAATAGCAGCAGGAGCTGGAAAAGGACTGGAATACTTGCATGACAAGGCAGACCCCCCAGTTATATACAGAGACCTGAAATCAGCAAATATATTACTGGGTGAAGGATTCCATCCAAAGCTGTCGGACTTTGGACTGGCCAAACTTGGCCCAGTTGGAGATAAAACACACGTGTCTACACGTGTGATGGGAACGTACGGCTACTGTGCTCCGGAGTACGCTATGACTGGGCAGTTGACCATCAAATCTGACGTTTACAGTTTTGGTGTTGTTTTGCTTGAGATTATCTCTGGTAGAAAAGCCATTGATCCTGCTCGTCCTGTAGCTGAACAAAACTTGGTAGCATGGGCTCGTCCCTTGTTCAGAGATCGTAGATTGTTTACCAAAATGGCAGATCCTTTATTGAAGGGTCGTTATCCAAGAAGAGGTTTGTATCAAGCATTGGCCGTGGCTGCGATGTGCTTGCAGGAGCAAGCAGCTACTAGACCCTTAATAGGAGATGTGGTCACTGCTCTCACTTACTTAGCTTCTCAAAAGTATGACCCAAACGCTACTGCTACACAAAGTAATAGATGTCTAGAAGATCGTAGAAGCTTAGGTGGTGAATGTGACCGTATGCTTGCTACTAATGATGCACAGTATTCAACATTTTCAGAGAGATGA

Protein

Gene

>g48390.t1
ATGGGTTGCTTTCCATGCTTTAAATCGTCGACTCGTTTTAAGAAAAAAAGTGAATCTGACGCCACAATTAAACATGGAGGAGATCTGAAGAAAGAAGCTTCCTGTCAGAAGTTAACTAAGCATCCTGCTGGTAACCTTAATATTTTAAAGTTAAAATTTGTGTGATTCTGAGATATTTTTAGTTCCCGAGCCGATTTCAGTACTTCTCTGCGAATGGCCTAAATTAGCTTTTAAGTTTTGTGCTGGTTGAATTTTGAGTTGGATTTTTTATTGAAGAGGTGACTGGCAATGTGAAAGTTAATATTTATTGAAACGAGGGAGGGGAGGAGGGGGGGGGGGTTTTAAATTGTGAGACTGAATATAAATGACATCTCGCTTTTTGGGTGAGATCTTATTATCTCGGTGAGATGATTGGTGTGTAACAATTAAAAATGTTTTGAAATTCCCGTCTTGCCCCAGTGCAAAAGGTGATCATGGGTGGAGATCTCAGGCGAAGGAATTTAAAACCATGAAATATTAAACCTTTTCCAGATGCCATACATATGGTCGGAGTTCCCTTTTGGCAACAACTATCTTGAATCTTGAGTTTTGAAGCAGTAACATCTATCAAAGTAAAAAGTATTGGATACCATATGATTTTAAGTTAAAATAGTTATTTTGATGTTGATTACTATGACTTTGACAGATGTAATTCACATCACATAATTAAATATTCGTATATGAAATGTACATGAAATATGAATCGTAAGGTTATTTTATCCTTTGTTTGGTCAAAATACTTAAAGAGTTTTTTTTCTAATTTGTAATCAATAGATGGTTGTTTCCAAATTTTACTTCTAAATACTTTTGCAATTACTTGTAAAATTTTTCAAACATAAAATTCAAATAAGTTACATTAATAAGTTTGATTTCTTTATAAGAAGTTGTCCCCATGTCTTACTCCTGCTTTGGAATTAGAGCTTTTGTTAGTTATTGTCTTCAATTTCTGGTTTTTTCTTTTCACTTTTTCTGTACCATTTTGTATACTAATTTAAGAATGATTGTATTTGAAGAACCTTTTTAAAACACTCTCTACTAATTCAAATGGGCATCTTTTATTCAGTTGCATTTACATGCTGCGATTTAATTGCTATTGATTGGTCATTTCTACAACAGTTTTAAATGAATTTGATCATGGTATCAACTTTGGAAGTGGTAAAGTGAGGCAGAAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTGATGCATTTGCAGTTTGGATTTCCAGTTCTAAAAGAAGCAAGCATTTCTCATAATCATCCTTTTTGCCTGTCAATTGTTCTAAAAATCTAAATTAATTGTATATGCAAGAAATATTGAAATCGCAAAGTAATTCGGAGACCAGGACAGATGTAATAATTAACACAAATGGAAGGAAAGCCCACATTTCAGCTAGAACATTCACATTCGGTGAGCTTGCTGCTGCTACTCAAAACTTTAGGGAAGATTGCTTGTTAGGTGAAGGCGGTTTTGGACGTGTATACAAAGGCTGCTTAGAAAATGGACAAGTAACCACATATCCTCCTTTTTTACTTTCTTTTTTCATTTTTCTTCTTTTCTTTTTTCTTTTTTTTTAAGAAGGAAAAAGAAAAAAGAAAAACCATTGTGACCTTTTGGGCATACATCACTATATAGTAATAATTCAGATATGATTCGTTTCATTTGATGTTGGAATGATTTGGGTTTACAGGTAGTTGCTGTAAAACAGTTGGATAGGAATGGACTTCAAGGAAACAAGGAATTTCTTGTAGAGGTTCTTATGCTTAGCCTCTTACACCACCCTAATCTCGTGAATCTTATCGGTTACTGCGCTGATGGAGATCAACGTCTTCTTGTGTATGAGTTCATGCCTTTAGGATCGTTAGAAGATCATTTGCATGGTTAGGTTTATTCTTTTGTACATATATGCATGTTTGTAAATATTGCAGTTCGTTGCATATGCAATAAATTGAACAGTGATCACTCAGAGCGTTATTCATGAAGAGTATGTCAGAAAGCAAATTTCTTTCAGTAGGAGGGCTGTCATACATATAATATTAACACGCTTTAATGACAGTTAATTTGAATGTCAAATTAACATGTAACAACTCATATAGTATCGCCTATTCTGGTTTTAACCAGAATAGAGGAATATCGGTGAAAGAGCTAATGTCTTAACCAGCAGTATATTTTAACAGCATCAGATCTATTAGAGAACGAATTGTCATCACAGATCAATTGGCGATGTGGATAGGTATCTCATGATATTTATAGTGGACCAATCATATTAACTTGATAATGTGAGTAGGCTATTTTTGACATAATCTTCTACAATGTAGCGTTGGTCAAAGACCATTAGATCTTTGAACTAATGACCCAGATCCTTGGTTGTTTTCCTACTTCGACTTTAAATCAAAGTAGGTGATTCCATCCCATTATGATATAATAATGGCCAGTGACCACAAGCAATAACAGTTTTTTGTTAGTTCAAGATCTAGGTGTTGAAATCCATAGATTAAAAATCTCAAGACATTGAAATAGTTGAGTTTAGAACTGGCTATTTTGATGAAATGCCTAATTTGACTTAAGTATTGGCATCTGTAGACATTCCACCGAGCAAAGAGCCTCTGGATTGGAACACACGCATGAAAATAGCAGCAGGAGCTGGAAAAGGACTGGAATACTTGCATGACAAGGCAGACCCCCCAGTTATATACAGAGACCTGAAATCAGCAAATATATTACTGGGTGAAGGATTCCATCCAAAGCTGTCGGACTTTGGACTGGCCAAACTTGGCCCAGTTGGAGATAAAACACACGTGTCTACACGTGTGATGGGAACGTACGGCTACTGTGCTCCGGAGTACGCTATGACTGGGCAGTTGACCATCAAATCTGACGTTTACAGTTTTGGTGTTGTTTTGCTTGAGATTATCTCTGGTAGAAAAGCCATTGATCCTGCTCGTCCTGTAGCTGAACAAAACTTGGTAGCATGGGCTCGTCCCTTGTTCAGAGATCGTAGATTGTTTACCAAAATGGCAGATCCTTTATTGAAGGGTCGTTATCCAAGAAGAGGTTTGTATCAAGCATTGGCCGTGGCTGCGATGTGCTTGCAGGAGCAAGCAGCTACTAGACCCTTAATAGGAGATGTGGTCACTGCTCTCACTTACTTAGCTTCTCAAAAGTATGACCCAAACGCTACTGCTACACAAAGTAATAGATGTCTAGAAGATCGTAGAAGCTTAGGTGGTGAATGTGACCGTATGCTTGCTACTAATGATGCACAGTATTCAACATTTTCAGAGAGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008796223.1	5.0e-175	serine/threonine-protein kinase PBL27-like isoform X1
Swissprot	Q6I5Q6.1	3.0e-164	Receptor-like cytoplasmic kinase 185
trEMBL	A0A8B7CCC1	3.6e-175	serine/threonine-protein kinase PBL27-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G18610.1	73.82	4e-168	587		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g48390	AT5G18610.2	401	81	6	2	387	3	394	73.82	4e-168	587
g48390	AT5G18610.1	401	81	6	2	387	3	394	73.82	4e-168	587
g48390	AT5G13160.1	382	103	5	1	378	1	379	71.20	7e-158	553

Ortholog group

Species	Genes
Allium cepa	g356611.t1; g376231.t1; g379566.t1; g427929.t1; g48390.t1; g538072.t1
Allium fistulosum	AfisC1G02748; AfisC1G08803; AfisC1G08817; AfisC2G04418; AfisC2G07286; AfisC6G06604; AfisC7G04599
Allium sativum	Asa3G01333.1; Asa3G01334.1; Asa6G04424.1; Asa7G05618.1; Asa7G07060.1; Asa8G00578.1
Arabidopsis thaliana	AT5G02800.1; AT5G13160.1; AT5G18610.1; AT5G18610.2
Oryza sativa	LOC_Os01g71000.1; LOC_Os02g30900.1; LOC_Os04g32310.1; LOC_Os05g30870.1; LOC_Os05g30870.2; LOC_Os07g47270.1; LOC_Os07g49470.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	91	288	148.7	1.7e-43

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network