result

Gene information

Detail information of g493853

Location

Gene	Chr	Start	End	Strand
g493853	Scaffold_87401:HRSCAF_470487	175675	177175	+

Sequences

CDS

>g493853.t1
ATGTTTACTACTTCTTTGATTCCACCTTCAGACAATGCCAACAAGCGTAAAAGAAGACCTGCTGGAACGCCAGACCCAGACGCAGAAGTGGTGGCGCTGTCACCAAGAACACTTCTTGAATCGGACAAATACGTGTGCGAGATTTGCAACCAAGGATTCCAAAGAGATCAAAACCTACAAATGCATAGAAGAAGACATAAGGTTCCATGGAAGCTTCTAAAGAGGGATACCCCAGAGGTCCGGAAACGGGTATTCGTATGCCCGGAACCAAGCTGTCTTCATCATGATCCATGCCACGCTCTCGGTGACCTTGTTGGCATCAAGAAGCATTACAAAAGGAAGCACAGTAATCATAAGCAATGGGTTTGTGCTAAGTGTTCTAAAGCCTATGCTGTTCACTCCGATTTCAAAGCTCATCTTAAGACTTGTGGCACTAGGGGCCATTCTTGCGACTGTGGTCGAGTTTTTTCCCGGGTTGAGAGCTTCATAGAACACCAAGATTCATGCAGTGCAAGCCGAACTCAATCAAACACGAAAAAACACGATGACACTCAAGATTCGCGCACTGGATCTAACCCAAACTCATCAAGCCCGAGTGATACAAACTTAAGCAACATCGCACAGGTTAGGCCAACAAACCTAAAACCTCCATTTCTCTTCCAAAGTACAAATTTCCAAGCACCGTATCTTCTGGAATCTCGAAAGAAAAACTACGAACTACAACTGTTGCCTACTACATCTGAATATGATCTAAATATTCATCGCCATAAGCTTTTGAACCTTCGGTCATCTTGTTTAAATAATGAAGCAAATGGTAGTGAATTGCAATTGACGATAGGCCTTCAATCGAATACTCGTACCAATGCTAGTGGTGATGAAGCTACATTGGAAGCTAGGAACAAACAAAATGAATCAAGAGAACAAATAATGCATGCATTAAAAGAGAGAGAAATGGCCGAGAGAGAATTTGCAGAAGCAAAGAGGCTAAGGCATCAAGCACGAATCGAGCTTAGTAAGGCAATGGCTATAAGAGAGCAATCTATGACAATGATTAATTCGACTATGATGCAAGTGACCTGCCAAGCTTGTAAAAATCAATATCAAGTAAAGCTAAGGGTAGAAAATCTTGATGAGAACTCATCGGTTGTGACTGAAGGTTGGGTGTCCCCAAATTCTTGA

Protein

Gene

>g493853.t1
ATGTTTACTACTTCTTTGATTCCACCTTCAGACAATGCCAACAAGCGTAAAAGAAGACCTGCTGGAACGCCAGGTATATGATCCATCTACATAAACTCAGTTGATCTCTAAATTTTATAGTAAATTTCTAGAATTTCTAATTTTGATTATAATAAAACTGAAGACCCAGACGCAGAAGTGGTGGCGCTGTCACCAAGAACACTTCTTGAATCGGACAAATACGTGTGCGAGATTTGCAACCAAGGATTCCAAAGAGATCAAAACCTACAAATGCATAGAAGAAGACATAAGGTTCCATGGAAGCTTCTAAAGAGGGATACCCCAGAGGTCCGGAAACGGGTATTCGTATGCCCGGAACCAAGCTGTCTTCATCATGATCCATGCCACGCTCTCGGTGACCTTGTTGGCATCAAGAAGCATTACAAAAGGAAGCACAGTAATCATAAGCAATGGGTTTGTGCTAAGTGTTCTAAAGCCTATGCTGTTCACTCCGATTTCAAAGCTCATCTTAAGACTTGTGGCACTAGGGGCCATTCTTGCGACTGTGGTCGAGTTTTTTCCCGGTATTTTTTCATCTAGGTTATTACTTATTTGAATATGAAATTAGGTTTGCAACAAGGTAACACTTTGATATCAAACACTAAATGATGAATGATGGTCATGTGACAGTTGCTAGTTCAAGATTTGTCTTCTTATCTTTTTTATTTATGCAGGCCTTAGATTTTAACCATTATATGCTAGCTAAATATTGAATATAATTGTGAAAACCTAATATTTAAATTAATTTATGGCAAGGGTTGAGAGCTTCATAGAACACCAAGATTCATGCAGTGCAAGCCGAACTCAATCAAACACGAAAAAACACGATGACACTCAAGATTCGCGCACTGGATCTAACCCAAACTCATCAAGCCCGAGTGATACAAACTTAAGCAACATCGCACAGGTTAGGCCAACAAACCTAAAACCTCCATTTCTCTTCCAAAGTACAAATTTCCAAGCACCGTATCTTCTGGAATCTCGAAAGAAAAACTACGAACTACAACTGTTGCCTACTACATCTGAATATGATCTAAATATTCATCGCCATAAGCTTTTGAACCTTCGGTCATCTTGTTTAAATAATGAAGCAAATGGTAGTGAATTGCAATTGACGATAGGCCTTCAATCGAATACTCGTACCAATGCTAGTGGTGATGAAGCTACATTGGAAGCTAGGAACAAACAAAATGAATCAAGAGAACAAATAATGCATGCATTAAAAGAGAGAGAAATGGCCGAGAGAGAATTTGCAGAAGCAAAGAGGCTAAGGCATCAAGCACGAATCGAGCTTAGTAAGGCAATGGCTATAAGAGAGCAATCTATGACAATGATTAATTCGACTATGATGCAAGTGACCTGCCAAGCTTGTAAAAATCAATATCAAGTAAAGCTAAGGGTAGAAAATCTTGATGAGAACTCATCGGTTGTGACTGAAGGTTGGGTGTCCCCAAATTCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010932506.1	3.7e-90	protein indeterminate-domain 16
Swissprot	Q9C9X7.1	3.2e-83	Transcriptional regulator of starch metabolism IDD14
trEMBL	A0A835DC66	1.4e-91	C2H2-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68130.1	54.35	8e-107	384	AtIDD14;IDD14;IDD14alpha;IDD14beta	indeterminate(ID)-domain 14

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g493853	AT1G68130.1	368	123	8	15	368	41	377	54.35	8e-107	384
g493853	AT2G01940.1	396	152	9	15	384	44	430	52.78	1e-103	373
g493853	AT2G01940.3	397	155	10	15	384	44	431	51.89	1e-99	360

Ortholog group

Species	Genes
Allium cepa	g485780.t1; g493853.t1
Allium fistulosum	AfisC4G02144; AfisC5G02129
Allium sativum	Asa4G01783.1; Asa6G05915.1
Arabidopsis thaliana	AT1G25250.1; AT1G68130.1; AT1G68130.2; AT2G01940.1; AT2G01940.3
Oryza sativa	LOC_Os08g36390.1; LOC_Os09g27650.1; LOC_Os09g27650.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network