result

Gene information

Detail information of g494350


Location
GeneChrStartEndStrand
g494350Scaffold_87459:HRSCAF_470545416490416948+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020267511.11.0e-08zinc finger protein ZAT11-like
SwissprotQ9SLD4.12.3e-08Zinc finger protein ZAT11
trEMBLA0A5P1EST67.5e-09C2H2-type domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G59820.151.853e-22 100AtZAT12;RHL41;ZAT12C2H2-type zinc finger family protein

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Ortholog group
SpeciesGenes
Allium cepag134102.t1; g342744.t1; g433211.t1; g494350.t1; g494354.t1; g494363.t1; g514836.t1
Allium fistulosumAfisC1G06524; AfisC1G06527; AfisC1G06528; AfisC1G06529; AfisC1G06530; AfisC5G04403
Allium sativumAsa0G04218.1; Asa0G04814.1; Asa4G04225.1; Asa7G02954.1; Asa7G02977.1; Asa7G02979.1; Asa7G02980.1; Asa7G02981.1; Asa7G02982.1; Asa7G02983.1; Asa7G02984.1; Asa7G02985.1; Asa7G02989.1; Asa7G02990.1; Asa7G02999.1
Arabidopsis thalianaAT2G28710.1; AT3G53600.1; AT5G59820.1
Oryza sativaLOC_Os03g17150.1; LOC_Os05g02390.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF13912.3zf-C2H2_6Domain547837.31.7e-09
PF13912.3zf-C2H2_6Domain9612140.12.1e-10

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0006972Phyperosmotic response
GO:0006979Presponse to oxidative stress
GO:0008150Pbiological_process
GO:0009266Presponse to temperature stimulus
GO:0009314Presponse to radiation
GO:0042493Presponse to drug
GO:0009408Presponse to heat
GO:0009409Presponse to cold
GO:0009411Presponse to UV
GO:0009416Presponse to light stimulus
GO:0009611Presponse to wounding
GO:0009628Presponse to abiotic stimulus
GO:0009631Pcold acclimation
GO:0009642Presponse to light intensity
GO:0009643Pphotosynthetic acclimation
GO:0009651Presponse to salt stress
GO:0009889Pregulation of biosynthetic process
GO:0010033Presponse to organic substance
GO:0010200Presponse to chitin
GO:0010224Presponse to UV-B
GO:0010243Presponse to organonitrogen compound
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0040008Pregulation of growth
GO:0042221Presponse to chemical
GO:0042538Phyperosmotic salinity response
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045926Pnegative regulation of growth
GO:0048519Pnegative regulation of biological process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1901698Presponse to nitrogen compound
GO:1901700Presponse to oxygen-containing compound
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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