result

Gene information

Detail information of g494354


Location
GeneChrStartEndStrand
g494354Scaffold_87459:HRSCAF_470545456880457344+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010517014.16.6e-11PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD4.13.2e-10Zinc finger protein ZAT11
trEMBLA0A6I9R8N81.8e-10zinc finger protein ZAT11

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G37430.143.703e-24 107ZAT11C2H2 and C2HC zinc fingers superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag134102.t1; g342744.t1; g433211.t1; g494350.t1; g494354.t1; g494363.t1; g514836.t1
Allium fistulosumAfisC1G06524; AfisC1G06527; AfisC1G06528; AfisC1G06529; AfisC1G06530; AfisC5G04403
Allium sativumAsa0G04218.1; Asa0G04814.1; Asa4G04225.1; Asa7G02954.1; Asa7G02977.1; Asa7G02979.1; Asa7G02980.1; Asa7G02981.1; Asa7G02982.1; Asa7G02983.1; Asa7G02984.1; Asa7G02985.1; Asa7G02989.1; Asa7G02990.1; Asa7G02999.1
Arabidopsis thalianaAT2G28710.1; AT3G53600.1; AT5G59820.1
Oryza sativaLOC_Os03g17150.1; LOC_Os05g02390.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF13912.3zf-C2H2_6Domain537841.57.8e-11
PF13912.3zf-C2H2_6Domain9812341.11.1e-10

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0008150Pbiological_process
GO:0042493Presponse to drug
GO:0010038Presponse to metal ion
GO:0009889Pregulation of biosynthetic process
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010035Presponse to inorganic substance
GO:0010045Presponse to nickel cation
GO:0010200Presponse to chitin
GO:0010243Presponse to organonitrogen compound
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0070887Pcellular response to chemical stimulus
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071241Pcellular response to inorganic substance
GO:0071248Pcellular response to metal ion
GO:0071289Pcellular response to nickel ion
GO:0080090Pregulation of primary metabolic process
GO:1901698Presponse to nitrogen compound
GO:1901700Presponse to oxygen-containing compound
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000026Pregulation of multicellular organismal development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000280Pregulation of root development
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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