result

Gene information

Detail information of g495310


Location
GeneChrStartEndStrand
g495310Scaffold_87567:HRSCAF_47065313518571353811-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrTYG55132.17.6e-24hypothetical protein ES288_D09G247400v1, partial
SwissprotO22860.13.0e-2560S ribosomal protein L38
trEMBLA0A2N9GKW61.9e-2460S ribosomal protein L38

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G43460.185.515e-28 120Ribosomal L38e protein family

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag106141.t1; g112901.t1; g115463.t1; g116373.t1; g116396.t1; g116398.t1; g134686.t1; g135123.t1; g139391.t1; g140240.t1; g161441.t1; g164289.t1; g177160.t1; g201656.t1; g203306.t1; g205935.t1; g233077.t1; g233169.t1; g238300.t1; g254215.t1; g265403.t1; g275278.t1; g280075.t1; g284280.t1; g294708.t1; g299193.t1; g304789.t1; g306986.t1; g308420.t1; g309411.t1; g309508.t1; g319886.t1; g332412.t1; g340261.t1; g342147.t1; g348061.t1; g35619.t1; g35620.t1; g358237.t1; g359054.t1; g365724.t1; g366735.t1; g373580.t1; g383914.t1; g413303.t1; g415116.t1; g415411.t1; g42975.t1; g437213.t1; g439713.t1; g442471.t1; g444106.t1; g445988.t1; g453602.t1; g454555.t1; g454787.t1; g454788.t1; g48054.t1; g489497.t1; g495310.t1; g503734.t1; g510653.t1; g514083.t1; g514084.t1; g534000.t1; g53664.t1; g73992.t1; g77413.t1; g82907.t1; g82910.t1; g83149.t1; g86770.t1; g92788.t1; g9857.t1
Allium fistulosumAfisC1G01040; AfisC1G01306; AfisC1G01396; AfisC1G03376; AfisC1G03575; AfisC1G03622; AfisC1G03835; AfisC1G04569; AfisC1G04748; AfisC1G05166; AfisC1G05601; AfisC1G05873; AfisC1G06106; AfisC1G07106; AfisC1G07354; AfisC1G08467; AfisC1G08899; AfisC1G08985; AfisC2G02445; AfisC2G02793; AfisC2G03877; AfisC2G04843; AfisC2G05412; AfisC2G05678; AfisC2G06296; AfisC2G06915; AfisC2G07411; AfisC3G00999; AfisC3G01639; AfisC3G01981; AfisC3G02791; AfisC3G03023; AfisC3G03514; AfisC3G03600; AfisC3G03707; AfisC3G04175; AfisC3G04383; AfisC3G04384; AfisC3G04737; AfisC3G05359; AfisC3G05549; AfisC3G05706; AfisC3G06870; AfisC3G07087; AfisC3G07212; AfisC3G07671; AfisC4G00790; AfisC4G03144; AfisC4G04786; AfisC4G05254; AfisC5G00917; AfisC5G01190; AfisC5G01592; AfisC5G02036; AfisC5G05192; AfisC5G05528; AfisC5G05927; AfisC5G05966; AfisC5G06445; AfisC5G06593; AfisC6G00059; AfisC6G00403; AfisC6G00514; AfisC6G01518; AfisC6G02461; AfisC6G04076; AfisC6G04247; AfisC6G06207; AfisC7G01821; AfisC7G02180; AfisC7G02555; AfisC7G02617; AfisC7G03271; AfisC7G05545; AfisC8G00616; AfisC8G01179; AfisC8G01196; AfisC8G01218; AfisC8G01579; AfisC8G01643; AfisC8G01871; AfisC8G02026; AfisC8G02309; AfisC8G02566; AfisC8G02578; AfisC8G02713; AfisC8G02725; AfisC8G04470; AfisC8G05662
Allium sativumAsa0G00028.1; Asa1G02992.1; Asa2G00250.1; Asa2G03564.1; Asa4G04199.1; Asa5G02336.1; Asa5G04339.1; Asa5G04340.1; Asa6G04329.1
Arabidopsis thaliana
Oryza sativaLOC_Os11g47400.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF01781.15Ribosomal_L38eFamily104170110.33.2e-32

Gene Ontology
AccessionOntologyName
GO:0022625Ccytosolic large ribosomal subunit
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003723FRNA binding
GO:0003735Fstructural constituent of ribosome
GO:0005829Ccytosol
GO:0005198Fstructural molecule activity
GO:0005488Fbinding
GO:0005840Cribosome
GO:0005623Ccell
GO:0005737Ccytoplasm
GO:0006412Ptranslation
GO:0006518Ppeptide metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009987Pcellular process
GO:0010467Pgene expression
GO:0022607Pcellular component assembly
GO:0015934Clarge ribosomal subunit
GO:0016043Pcellular component organization
GO:0019538Pprotein metabolic process
GO:0022613Pribonucleoprotein complex biogenesis
GO:0022618Pribonucleoprotein complex assembly
GO:0022626Ccytosolic ribosome
GO:0032991Cmacromolecular complex
GO:0034622Pcellular macromolecular complex assembly
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0043043Ppeptide biosynthetic process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043603Pcellular amide metabolic process
GO:0043604Pamide biosynthetic process
GO:0043933Pmacromolecular complex subunit organization
GO:0044085Pcellular component biogenesis
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044391Cribosomal subunit
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044445Ccytosolic part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0065003Pmacromolecular complex assembly
GO:0071704Porganic substance metabolic process
GO:0071826Pribonucleoprotein complex subunit organization
GO:0071840Pcellular component organization or biogenesis
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1901566Porganonitrogen compound biosynthetic process
GO:1901576Porganic substance biosynthetic process
GO:1990904Cribonucleoprotein complex

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K02923RP-L38e, RPL38; large subunit ribosomal protein L38eEC:- Ribosomeko03010

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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