result

Gene information

Detail information of g497240

Location

Gene	Chr	Start	End	Strand
g497240	Scaffold_87806:HRSCAF_470892	47482	48897	+

Sequences

CDS

Protein

Gene

>g497240.t1
ATGGACAACAATGGCAGAAACAGTTTTCTTTGCAGGCAATCAAGCACCAGGTGGATACCAACAGCTGATCAAATAAGAATACTGAGAGAGCTTTACTACAACAATGGCGTTCGATCACCAACTGCTGATCAAATTCAAAGGATTTCAGCTAGGTTAAGGCAATATGGAAAGATTGAAGGAAAGAATGTGTTTTATTGGTTTCAGAATCACAAGGCTAGGGAGAGACAAAAGAAAAAGCTCACTATGAACTGCAATGATAGCTCATGCAGTGAAAACAAACTTTATAACACTGAAATTAATGTTCCTTATCATGGTAAGTCTATTTTAAGCTTGGTTTCTTTTTTCGCTCTTTTATTATGTGGGTTTTCATTTTCTTTTGTAACCTCTGGCTCAATTACTTTTTCGGTCTAGGGTTTTATGATGTTGGAAACAATGGATATGGTGGTGAGCAAATGTTCATGGAAAGAAACTTGAGAGTAAGCTCTACTTAACATTTAACTAGAAGTTATGAGTTTACAAAGAAAAAATTATGTGTATTTGAGGACTGTAGGGTTTGTTGGAAAATTTACGTTGATCAAAGTTTATATATGCATTCATAATTCGGTGTAAAAAATCAACACAAGTTTTACTGGCAGGAAAATTTAAAATTATCGGTGGGGAAAAAAATCTCTACAGTGCATCAATACTAGAATTTGTGCACTTGCAACATAAATGGTTTAAATGTATACATAAAACATATTATAAAGTTGTAACATTTTGTGAAGAAGGTTATAGAGTTCGGTTCTAATCACTGAATTAACCAGACCTTGTATGAAATCTTTCTTTCATGAATTTTTACAAGATAATTTTTTTTTTCCCTTGAACTTAATCACTCATAATATAGAAGTCTACCCTCACTAATTAAGGAGCCAAATTAATGGTCTAGATATGTAAATAGCAAGGTGTAGAGAGTAATATTATTTTTTTGACACTCCTTAAGTTGGTGCAACGTTACGTGGATAAGAGGAATTTACCTTCATCTTGAAAATAAATATGATTACTAGACCATTACATACTATTTAAGGTGTAAACATTTACATGCCTGGAGTGCAGGAGTCATGCTTGCCTATAGAGCATCCGACGATGCCATGGAATATGTACCAATATGTTAAGGATCAAGAAGAGCCACAATTCATGTCTGAACCAACCCGAGAAATAGAAACTCTCCCGCTTTTTCCAACTCGCTCAAAAGAGGAAGAACATGAAGAGCAATGTGAGAACGAGGCACACAAATTTTCATTCCCTGCCCACAATGGCAGTCACTGTACACAGCCAAATGGTTATCTCCCAAACTATCACAATAGTCATCATAATGGTGCTGCATCTCTGGAGCTTACCCTTAATTCTTTCCATTATGCACCTCCCGGTTCTATGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275164.1	8.1e-53	protein WUSCHEL-like
Swissprot	Q6YBV1.1	5.7e-35	Protein ROSULATA
trEMBL	A0A5P1EFH4	5.8e-53	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G17950.1	79.17	7e-32	134	PGA6;WUS;WUS1	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g497240	AT2G17950.1	72	15	0	9	80	30	101	79.17	7e-32	134
g497240	AT3G18010.1	105	43	2	15	119	74	173	54.29	1e-24	109
g497240	AT5G59340.1	66	19	1	14	79	11	75	69.70	4e-22	101

Ortholog group

Species	Genes
Allium cepa	g202184.t1; g460302.t1; g497240.t1; g504364.t1; g52383.t1
Allium fistulosum	AfisC1G01154; AfisC1G06506; AfisC1G06507; AfisC1G06511; AfisC1G06513; AfisC1G06520; AfisC2G02883; AfisC3G01730; AfisC5G04448
Allium sativum	Asa0G05545.1; Asa2G04201.1; Asa5G01500.1; Asa5G02437.1; Asa5G02438.1; Asa5G02897.1; Asa7G02965.1; Asa7G03012.1; Asa7G03013.1
Arabidopsis thaliana	AT1G46480.1; AT2G17950.1; AT2G28610.1; AT5G59340.1
Oryza sativa	LOC_Os04g55590.1; LOC_Os04g56780.1; LOC_Os11g01130.1; LOC_Os11g01130.2; LOC_Os12g01120.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	16	76	59.9	1.4e-16

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0001763	P	morphogenesis of a branching structure
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009933	P	meristem structural organization
GO:0009987	P	cellular process
GO:0010014	P	meristem initiation
GO:0010016	P	shoot system morphogenesis
GO:0010223	P	secondary shoot formation
GO:0010346	P	shoot axis formation
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019827	P	stem cell population maintenance
GO:0022412	P	cellular process involved in reproduction in multicellular organism
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032504	P	multicellular organism reproduction
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048443	P	stamen development
GO:0048466	P	androecium development
GO:0048507	P	meristem development
GO:0048532	P	anatomical structure arrangement
GO:0048608	P	reproductive structure development
GO:0048653	P	anther development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0080166	P	stomium development
GO:0090506	P	axillary shoot meristem initiation
GO:0090567	P	reproductive shoot system development
GO:0098727	P	maintenance of cell number
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network