result

Gene information

Detail information of g499628

Location

Gene	Chr	Start	End	Strand
g499628	Scaffold_88140:HRSCAF_471226	1	3332	-

Sequences

CDS

>g499628.t1
ATGTACTTTGATGATCAATTCAACACGCTTGCAATTCCTCCTGACAGCAATGAATTGATCAATGACTCCTTAGATATAGGTAAAGAGGTATCAAACAACAAGACCGATATTGTCGCTTCCCTTAGTTTAAATAACGAGGAATCGGAAAATTATTTTGATGTTGGGACAGTAAATGATAAATCGGTTGTATTTGGGACAGAAGTTACAATACCCGAAGTTGATTGTATAAGCGGAAATCCATTAACGCCCCAGCCAACTAACAAAATTGGTTGTAAAGTGAAACTCACTTCAAGTTTAGGAGAAGACGGAAAGTGGCGTATCAACAAGTTGTTTCTTGATCACAACCATGACTTAAGTCCTACGAAATCTCGATTCTTTCGATGTTATCGAAAAATTGATGAACATGTAAAAAGACAACTTGAAGTTTGCGATATTGCTGGAATTGGACCTAAGAAAAGTTTTAACGCATTAGTAGTCGATGCCGGTGGACATGAGAACTTGTCATTCATAGAAAAAGATTGTAGAAACTATCTTGATAAGGCAAGACAATTACGCCTTGGAGAAGGAGATGCTGTTGCGATTCAAAACTATTTCCTAAATATGCAGGCACAAAATTATAATTTTTTCTTTAGCATGGACTTAGACAATGATGGCCGACTAAAAAATGTTTTTGGGCAGATGAACGAAGTAGGAAGGCATATAAAGAATTTGGTGACAACGTGGCTTGCATGCATGTCTGATGTTGCTCCTAAAGGAATAATTACAGATCAAGACCGAGCTATGAAAAAGGCAATAGAGATTGCATTTCCTAATACTAGACATCGACTGTGTCTATGGCATGTGATGAAGAAGTTGCCTGAAAAATTTGAAAGCCATGGTTTGTATGAATCAATTAAAGGTAATTTGCAAAATGTGGTATATGATTCACAAGACTCGAAGGAGTTTGAGAAAAGTTGGAAAATAATGTTAGATAAGTTTGACTTGCATGATAATATTTGGTTGAGTGAATTATATAAGGAAAGACATCACTGGGTACCGTGCTTTGTGACATCAAATTTTTGGGCAGGGATGTCCACCACTCAAAGAAGTGAAAGTATTAATGCTTTCTTTGACGGATACGTGAATGCTAAAACCACTTTGAAGCAATTTGTAGAGCAATACAATCACGCATTGAAGGCCAAAATTGAGAAGGAGAGTCAAGCTGACTTCAAGTCATTTTCACAGAGTATTCGATGTGCAACAACGTACGATATAGAGAAGCAATTTCAAAGTGTTTATACACTTAAGAAGTTCAAGAAATTTCAAATAGAGTTAACCGCCAAGTTATATTGTGATATAACTGAAACTAGAGAGGGTTTCATGGGTACAGAGTTTGATATAAATGAAGATGTGGCTCCTAATGTGAATGATAGACTGCTTGTTGTGCCAAAACCAAAAAAGAAAAAAATGCAGGATATTAATACTTCAACTTTTGATAATGCGGAACATGATAGTAGAAATTTTGTACAACAACTTGAGGTACCTTCAAAATCAGAGGCTGCAGCTGAAAGTGCAG

Protein

Gene

>g499628.t1
ATGTACTTTGATGATCAATTCAACACGCTTGCAATTCCTCCTGACAGCAATGGTAATCATCTTTCATCAATTTCTGTTTCAATATTTTCATTATCATTCAAAATTATGATTGGATTCATTGCATTTATTTACTTTTTGCATTACCAATCTCAAGCATCCATTCGGAATGATGAAGGATCCAACACATATAAAGTGATAGCAACAACAATCAAAAAGTTTGTTTAATCAAAAACAGCAAACTTATTTTGCAAAGTAGATGCTCTGACCCCACTTATTACTTTACTGTGTACAATATTCAATTTGTACTTTGGCACAAATACAATAATTTGCTTTTACACTTAACAATGGGTTTCTGTTCATGCACTCAAATGTTGTTGTTTACACTATTTTAACCAAAATGAGTCAACTGAGATACTATGTATATGATTAGATAATGAAAACTAAAATGGATACAACATCAAATGCAAAATAATACCTACTCAAGACACATTGAATTACTATCCAAAATTTTCATGTCTGATTTTTTTTTTCTCATGCATATTTTTGGAGTTGCCGTTATGATATTTTTATCATTTTGTCACTACTTGTATGATCATTTGCAGAATTGATCAATGACTCCTTAGATATAGGTAAAGAGGTATCAAACAACAAGACCGATATTGTCGCTTCCCTTAGTTTAAATAACGAGGAATCGGAAAATTATTTTGATGTTGGGACAGTAAATGATAAATCGGTTGTATTTGGGACAGAAGTTACAATACCCGAAGTTGGTATGAAATTTAATGTCGTTGAAGAAGTATTTCAATGTTTTAAAAACTATGCAAAGCATATGGGATTTCCAGCAAGAAAAAGATCAAGTAAAAGGGACGAGGATGGACACTTAAGATATATAACATTTGCATGTGGCTGATGTGGGAAACCAGATTGTATAAGCGGAAATCCATTAACGCCCCAGCCAACTAACAAAATTGGTTGTAAAGTGAAACTCACTTCAAGTTTAGGAGAAGACGGAAAGTGGCGTATCAACAAGTTGTTTCTTGATCACAACCATGACTTAAGTCCTACGAAATCTCGATTCTTTCGATGTTATCGAAAAATTGATGAACATGTAAAAAGACAACTTGAAGTTTGCGATATTGCTGGAATTGGACCTAAGAAAAGTTTTAACGCATTAGTAGTCGATGCCGGTGGACATGAGAACTTGTCATTCATAGAAAAAGATTGTAGAAACTATCTTGATAAGGCAAGACAATTACGCCTTGGAGAAGGAGATGCTGTTGCGATTCAAAACTATTTCCTAAATATGCAGGCACAAAATTATAATTTTTTCTTTAGCATGGACTTAGACAATGATGGCCGACTAAAAAATGTTTTTGGGCAGATGAACGAAGTAGGAAGGCATATAAAGAATTTGGTGACGTTGTCACTTTTGATACAACGTATTTGACAAACAAGTATGATATGCCTTTTGCACCTTTTGTTGGAGTCAACCATCATGGACAATCGATATTACTAGGATGTGGGTTGCTTTCAAGTGAAACAACGGAAACTTTTTTATGGCTTTTCAGAACGTGGCTTGCATGCATGTCTGATGTTGCTCCTAAAGGAATAATTACAGATCAAGACCGAGCTATGAAAAAGGCAATAGAGATTGCATTTCCTAATACTAGACATCGACTGTGTCTATGGCATGTGATGAAGAAGTTGCCTGAAAAATTTGAAAGCCATGGTTTGTATGAATCAATTAAAGGTAATTTGCAAAATGTGGTATATGATTCACAAGACTCGAAGGAGTTTGAGAAAAGTTGGAAAATAATGTTAGATAAGTTTGACTTGCATGATAATATTTGGTTGAGTGAATTATATAAGGAAAGACATCACTGGGTACCGTGCTTTGTGACATCAAATTTTTGGGCAGGGATGTCCACCACTCAAAGAAGTGAAAGTATTAATGCTTTCTTTGACGGATACGTGAATGCTAAAACCACTTTGAAGCAATTTGTAGAGCAATACAATCACGCATTGAAGGCCAAAATTGAGAAGGAGAGTCAAGCTGACTTCAAGTCATTTTCACAGAGTATTCGATGTGCAACAACGTACGATATAGAGAAGCAATTTCAAAGTGTTTATACACTTAAGAAGTTCAAGAAATTTCAAATAGAGTTAACCGCCAAGTTATATTGTGATATAACTGAAACTAGAGAGGGTTTCATGGGTACAGAGTTTGATATAAATGAAGATGTGGCTGTTGAAAATTATAGAAAATTGCTATCATTTACAGTTTTATTTAACAAAGAAAATTGCGAAATTAGTTGTAGTTGTCGAAAGTTTGAGTTTAAAGGTATACTTTGCAGACATGCACTTCTTGTATTGACTAAGAATAATGTGACAACGATTCCGAATAGATATATTTTAGACAGATGGAGAAAAGATGTACTGAGATCTCATACGAGGATCCGACTCAATTATGATGGTGCACCGGCAACATTATGACTCAATTATGATGGTGCACCGGCAACATCTGCACAATTGCGATATAAAGAGATGTGTAATGAATTTTCTAAAGTGGCTGATTTTGTAGCAGATGATGAAGTTTCTTTTAGTCATGTGATGGAATGGATAGAAAGTAAGAAGTCTGAATTTTTTCTACAGAAACGCAATACATCTCTTACATGCAAAACTGGTTTAAACAAAGATGAATGTGGTAGGATAAGGGATTGTTCAAAGGTGCAAGATCCAATAAGAAATAAAACCAAAGGACGAACTCGAACAAATAGATTCAAGTCATCCTTGGAGAGAAAAAATGAAGAGAAGTAGCCGAATGACTTTGAAAAGTAAGGATACACAGGCAAGTCATTCTTTCTAACCTCAGATTCTAGTAGTATGTCTTTGTCATACTTTATCTTGTATGTATAAAGATAAATGATACCTTTATTCTAAGTATGGTTATATGGTAGTTGTGTTGACTATGAAATATACACCATAATGTCAGTACAACTTTTATGATGTTGTCATGCTTTGTAAATTTGATATGACTAAACTAAAAAAAAATTACCATTTTGCAGCCTAATGTGAATGATAGACTGCTTGTTGTGCCAAAACCAAAAAAGAAAAAAATGCAGGATATTAATACTTCAACTTTTGATAATGCGGAACATGATAGTAGAAATTTTGTACAACAACTTGAGGTACCTTCAAAATCAGAGGCTGCAGCTGAAAGTGCAGGTTCAATGGAACAAAACTTATATCTTCCACCTATATACCAAATGGTATACTCTTCTGTAGCAACTCAATGCTTTTGTACTCAATACTTCTTTACTATTACTTTGATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_022869242.1	7.1e-126	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8.1	9.8e-64	Protein FAR1-RELATED SEQUENCE 5
trEMBL	A0A8S0QJ75	2.6e-130	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38180.1	33.50	9e-66	248	FRS5	FAR1-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g499628	AT4G38180.1	412	221	5	83	442	142	552	33.50	9e-66	248
g499628	AT4G15090.1	417	229	7	88	451	122	537	32.13	3e-57	219
g499628	AT1G76320.2	467	244	11	60	452	18	476	30.19	4e-51	199

Ortholog group

Species	Genes
Allium cepa	g157490.t1; g171993.t1; g338653.t1; g499628.t1; g499637.t1; g499639.t1; g509151.t1
Allium fistulosum	AfisC3G06873
Allium sativum
Arabidopsis thaliana
Oryza sativa	LOC_Os11g45530.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	83	120	25.9	1.1e-05
PF10551.6	MULE	Domain	231	284	50.3	2.3e-13

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K17604	ZSWIM3; zinc finger SWIM domain-containing protein 3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network