result

Gene information

Detail information of g50032

Location

Gene	Chr	Start	End	Strand
g50032	CHR2	176929245	176931500	-

Sequences

CDS

Protein

Gene

>g50032.t1
ATGGCGCACGTGTTATTTTTAACGGCTGCTTCCTCCGTTATGAAACCGCTCCTTTTTACGACCAGACCACTTTTCCAGGCAACTTTTCGATTTGTAGCAACGCAAGTAGCAATAGTGGCCCGGAAGTCGCGTCCCTAATGGCGGATCTGGCTACGTTACGAACCGGGTAAATAGGTACTTTGCAGCAGCTGTTAGGAACGGAGTTTATGGTGTCGCTGAGTGTGTGCAGACAGTTAGCGCGAGTGGGTGTAGTGATTGTTTGCAAGTTGCGGTTGCAAATGTGAGAGGGTGTTTGGGGAAGAAGGAAGGGGCCGCGGTGGATGCGGGTTGTTTTTTGAGGTTTTCGGATGTGGATTTTTTTCGAGATTACCATAACTGTCAATCTTCAGTCTCTTCTACCCTCGTCTTCAGGTACGTAGGTCAATATTAGTTCATTTTAGGAATTTGTTCGTTTATCAATCAATTAGTGTGAATTTGTTGCAGGAAGTCAAGAAACAAAGGGGCCATCATAGGAGGAGTAGTGGGCAGCTGTCTTTTGATTCTATTTGCGCTCTTGTTATTTTTATGGTTAAGAAAATCAAAAAAAGTCAAAAGTAGGTGGAAGAGGTAATTTATCTTTATTTTTATTTATTTTTTATTAAACATCGTAACAGAAATAGTTCCAATTCCTCTATCCCATTTTACAATATAGATACAGAAGAATTGAGCTGGACACAAATAGCTAACGGTTTTTATAATATAAAGTAGCCATAACTGACTAGTTGTTTTTCAAAAATAATATCAGAAACTTTGGCGTGCGAGCTTAATAATGCACTAATATTAATCATAATAAGTTATGAATGGTTTGTGGGAATTTATATATAATTGTGTTACTATCTGAGTTTGGCGGATTGTAACTGCACAACGTAATCCTTTCTGAAAGGGATTTGTATTGGTCAAAGCAGGATTAATTAAATTATGCTTGCATTGTTTAAAGAAGCAAACTGTGTTAGAAAGTTTATTTATAAATAAACAGTTCAGGAATCATATGAATCTACCCAGTTGCAGCATGGAAATTTATACCTTATTAAAATAGAAATAAAATACCTTTATATATTTGGTCAAGATTGTTATTCATTTTGATTAAAATGGTTTAATATATAGCCGCCTGCTGCTGTGATTAGTGTCTTCTTAGTGATGAAAGCCACATTGGCTTTTTTTCCTCAGTTTTTGTTTTTTACTTGATTAGTAAGTATTTCCAGAAGATTCAAGGGCACCGCGTCGGATGTTAGGGGCTACCATGGCATACCGGTTTTCCGCCGACTTCAGTTAAAAAAATAAAATAATAATAATAATCTATTTGGCTGAATACGGTAGCAACTAATATAGTTCTAGATGCCCTAAGCTTTACCCTAAAACTGAAAACCAAATGGCCTATAAATGTAATGTTGACTCTAGCAGCAAGTTACAAACTAGACAAATGGCTAGTTTGTCGGCACGCGGATTTAAAGCTACTTTACGTATTGTGCATGTAATTTATGTGTCCTGAAAGTGAAACTCCTATTGTGACATGATCAAATCAAATAGTAATAATAATCAATATACAAAAGCGTTGCAGGGCTTTTCTTAATTCATTGGAGATTTTATTAAAATACGTACGGTATATATTTCCGTACTATTATATGAAGCAATACATATGAATCATACATTGATTGACTAATTTTGCAGGCAACATTCTAGGGGCTACAGTACTACGTGGACCTGTCAATTTCAGTTACAAAGATCTTAAATCCGCCACCAAAAATTTTAGTGATGAAAACAAACTCGGAGAAGGTGGATTTGGTGACGTATAAAAGGTGCAGTCACTCGTCTCTTTCCATAACAATATTAAAATAAATTACATCTCTAATTCTAATTGTTTTCCTATACCAATATTATTATGCTTTGACAAGGTGCACTGAAAAATGGTAATATCGTGGCTGTAAAAAAATTAGCAATATCTCAAACAAGTAGAGCCAAGGCAGATTTTCAAAGTGAAGTAACACTTATAAGCAATGTTCATCATCGCAACCTAGTTCGATTGCTTGGTTGTTCTAGCAAAGGCCCTGAATTGCTGCTAGTTTATGAGTACATGGAAAATAGCAGCCTCGATAAGTTCTTATTTGGTAAAGCCCTGTTACATTCTCAGTAATGCAATACTTTAAAATCAGATTGTTTTTTGATGATATCATATGCATTTTAACAGGTGAAAAACGTGGCACTTTAAACTGGAAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020093380.1	6.5e-54	cysteine-rich receptor-like protein kinase 2
Swissprot	Q9CAL3.1	4.4e-23	Cysteine-rich receptor-like protein kinase 2
trEMBL	A0A6P5FJM1	4.7e-54	cysteine-rich receptor-like protein kinase 2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G70520.1	47.54	5e-25	110	ASG6;CRK2	cysteine-rich RLK (RECEPTOR-like protein kinase) 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g50032	AT1G70520.1	122	54	3	96	208	302	422	47.54	5e-25	110
g50032	AT4G23240.1	112	52	3	103	208	12	122	47.32	3e-22	101
g50032	AT1G56140.1	132	62	3	84	207	660	788	44.70	3e-22	101

Ortholog group

Species	Genes
Allium cepa	g177763.t1; g460696.t1; g50032.t1
Allium fistulosum	AfisC1G08533; AfisC3G03925; AfisC3G08725; AfisC8G00782
Allium sativum	Asa1G02243.1; Asa2G03220.1; Asa2G05467.1; Asa2G05468.1; Asa2G05834.1; Asa2G05839.1
Arabidopsis thaliana	AT1G70520.1
Oryza sativa	LOC_Os01g36790.1; LOC_Os05g03920.1; LOC_Os10g34220.1; LOC_Os11g28104.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01657.14	Stress-antifung	Family	28	88	27.7	2.8e-06
PF07714.14	Pkinase_Tyr	Domain	132	200	48.7	5.2e-13

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network