result

Gene information

Detail information of g501304

Location

Gene	Chr	Start	End	Strand
g501304	Scaffold_88343:HRSCAF_471429	88956	91063	+

Sequences

CDS

Protein

Gene

>g501304.t1
ATGTCTAATTGGAACAAGGGCCCACTTCTCGGGCGCGGCTCAACCTCCATCGTCTCCCTCGCTTCCGATCCTATCTCCGGCCAACTCGTCGCTGTTAAATCAACATGCCTCTCTCATTCCGGATTCCTTCAATATGAAAAGAGCATTCATTCTTCCGTCTCTTCTCCTCATATAATCTCTTACTTAGGCTATGATTTTGATAGTGATTTCTACAATCTCTTTCTCGAGTACGCCTCCGGTGGATCTATCTCCGATCTCATCCAAAAGCATAAGCTTCAGGAATCCGAAATCAGATCCTTAGTGAAAGACATTTTGCTTGGATTGAACCATCTTCACTCCATGAAAATCGCCCATTGCGACATTAAATGTCAGAACATACTCATCACTGGCGATGGAAGAGCGAAAATTGCAGATTTTGGTTGTGCCAAGTATATAGACTGCGATAAACAAATCAGGGCAAAGATAGGGGGAACGCCGATGTTCATGGCACCAGAGGTGGCCAGAGCAGAAGAGCAAGGACTGGCTTCAGATGTGTGGGCACTCGGATGCACAATTATCGAAATGGCAACAGGCAGAGCTCCATGGTTGAACATATCGGATGCGGGTTCCCTTCTTTATCTGGTCGGATTCACAGAAGATCTTCCTGAAATCCCTGAATGGATTTCGGACGCTGGTAAGGAATTTTTGAGAATGTGTTTGGTGAAGGATGCTGGTAACAGGGCAACTGTCGATGAGTTGTTGATACATCCTTTCTTAACGGGTACGGGTGTGGATGTAGGATACAAGTGGGTTACCCCAAGGAGTGTATTGGAGAACAACTCCTGGGATTCAGTATCTGAAAACGAACCGGTAGTTGATTTAAGAAATGACTGGATATCGGATGTGATAGGGTCTGGGGATGGACCCGAATGGAGCTGGGATGACAGCTGGCTTACAGTACGCAATGAATCATTGTTTGATACAGTTTTTGTTGCTACTTCTGCAACTGCCATTAGTGAAGAATTATCAGAATTTAGTAATGGTAGTGAAGTATGTGATTATAGAGATGTTAATTATGTGCGTGCATATAACGAAGAAGCTGTGAATGTTTCTGAAATTTGTACGATGGACTTGGAGGATAATGGTATAGAACTAATTATAATTGCAAATAATATATTTGGGCTATTTGAAATTGGTTTAGCTATATGATTGCTTATGGTTTTAAAATATTATTATGTTTTGTTATTATAAAAGGGGCGACAACTGGGAAGATTAAAAAGACAGAAAAGGTTGGAGAGTCCAATTGCATTTGAACTGGGAGCGTGGCCTGTAATATAATTTGTTCAATGAAGCAAAAAGAGCGATCAAAAGATATAGAGCACAGATGATGTATATTCCAGAAATGTTCACGTCCACAATCGAACTGATCACGTACACAGTTTGTGAAAACGGAGTAAGAGTCTTCGAGCAGTTCACATAAAGAGATGGAGAATATAGACATATTAAACGTGGCAAAAATGGGATGAAAACGCGAGGAATGCAGCTGCGTCCAATTCGCTGACGGCTGAGTTTGGTGTTGCAAAGTCAGCAAAGCCTTCGTTTTGACTTTTGGTAGAAGTAAGTAGTTCATTACTAATCAGTGAAGGAGAGCATGCACGTGGCTTAAGTTAGTTGAATCGTGCACTTTAGTTGGATCCGTTTTCAAATTATATTCAAAACTTGCAAGTGTGAAACACCTTCTTTTTTAAGACACGTGTTTGCTTATACAAATGTTGTCATTGGTTGTGTCTCATTGTTTTATTATTACTATTATGAGAATAAACTGGCTGTCTGTTTTAAGCTGTTCTAACGCCTTAATCGTTAGTTTTTAATGTCCATTAATCATGTTTAAACGCTTGCTTTTGAAGTTGTAGCAGCATAAGTTCGCTAAAGACCACGTGGATTTGAATTAGTTGATTCGTACCTTTCAGTTTGGGTTTACTGTTCTCGTATACTTTTAGTGTTCTCGAATGTGCAAGGCAATTAATACATGACTATATCTTTCAGAATCAAACTGTTCGCACAAAGAGTTTGTGAAATCGGATCGTAAGAGTCTTGGACTGGTCCACGTAAAGAGACCGAGAATGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010926215.1	3.3e-84	mitogen-activated protein kinase kinase kinase 18
Swissprot	Q9ZVP5.1	6.4e-61	Mitogen-activated protein kinase kinase kinase 18
trEMBL	A0A6I9RGN7	2.3e-84	mitogen-activated protein kinase kinase kinase 18

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G26890.1	48.25	1e-68	257	MAPKKK16	mitogen-activated protein kinase kinase kinase 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g501304	AT5G55090.1	381	173	11	2	340	4	376	41.47	1e-68	257
g501304	AT4G26890.1	286	131	5	3	277	4	283	48.25	1e-68	257
g501304	AT1G05100.1	305	153	7	3	291	2	302	43.28	2e-62	236

Ortholog group

Species	Genes
Allium cepa	g101987.t1; g123933.t1; g123940.t1; g123955.t1; g501304.t1
Allium fistulosum	AfisC3G08816; AfisC3G08820; AfisC3G08821; AfisC3G08824; AfisC3G08826; AfisC3G08827; AfisC6G00245
Allium sativum	Asa0G03825.1; Asa2G03244.1; Asa2G07284.1; Asa2G07285.1; Asa2G07286.1; Asa2G07291.1; Asa2G07296.1; Asa2G07297.1; Asa2G07299.1; Asa2G07316.1; Asa8G05772.1
Arabidopsis thaliana	AT1G05100.1; AT4G26890.1
Oryza sativa	LOC_Os01g50370.1; LOC_Os01g50400.1; LOC_Os01g50410.1; LOC_Os02g21700.1; LOC_Os05g46760.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	6	252	176.1	7.6e-52

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20716	MAPKKK17_18; mitogen-activated protein kinase kinase kinase 17/18	EC:-	MAPK signaling pathway - plant	ko04016

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network