result

Gene information

Detail information of g505241

Location

Gene	Chr	Start	End	Strand
g505241	Scaffold_88870:HRSCAF_471956	21948	25766	-

Sequences

CDS

>g505241.t1
ATGCAAAGTATGGTTGTTGCAAACAACCACGCAACAAGTACTATCAATGTGCGTCTCTCCACGCGATTCATGGACTACAGTTCAAGTGAAGACGACAAACTCATAGAAGACTTCACTGATATTGAAGAAGATGCCTCAGTCGCTGGAGTCGATCAGCATGCACCACATCATTTTCTTGAGCATGGAGAAAACTCAATGGCTTCTATAGATACATCCAACGGAGACCTGTTCTCTGATGAAGCAGATATAAAAATCCCAGAACCTTTTATAGGTATGGTTTTTGATTCCGATTCAGCTGCAAGAACATTCTACAATAACTACGCAATTCAACTAGGATTTGGAATCCGTGTCGCGCGGTCTCGTAGAGAAAAAAGGAAAGGTGTAGATGTATTGGTCATGAAGAGATTTGTATGTTTAAAAGAAGGGCATCACAAGAAGAAAACCATGGATTATGCCATAAAAAAGAAAAGGAAGCGTCTTTCTGTTAGGGATGGGTGTCCAGCAATGATGGAGGTGGTTAGAAGAGCGCCCGATAAATGGGTCATTACTAAGTTAGTATTGGATCATACTCATGTTACTGTAAGTCCTGATAGAATTAATGACATTCAATTTAATCGCTTATCAGGTAAAGATAAGGAGCACGATGACTGCTTAGATGAAACGAGGTTAAAAGTATTTGGAGGAGGAGATGCTCAAATTCTACTCGAGTATTTTAGAAAAGCTCAAAGTGTGAATTCCGGTTTCTTCTATAATATGCAAGTTGATAGTAGGAACCGTATAACCAATATATTTTGGGCTGATGTAAGAGCTAGACTGGCGTACAATTATTTTGGAGATGCTGTAACATTTGACACAAGCTATAAGAAGAATGAGAATATGCTGCCATTTGCTACATTTATAGGTCTAAATCATCATGGGAAACCTGTTAATTTTGGATGTGCTTTGGTTATCGATAAGACTAAATCATCTTTCACATGGTTGTTTGAAACTTGGAGCAGTGCTATGTATGGACCTCCACCTTTGTCATTTACTACAGATCAAGGCAACGCTATAGAGGCAGCGGTTGCTAAAGTCTTTTCTAATACTCGTCATAGATTATGCAAATGGCGCATTTTATCACGTTGCAAAAAGAAACTGTTCGGCATCTATCCTAGATATCCCACTATTTATCATGACTTGAAAAAATGTGTAATTAGTTCTGATACACCCGATGCTTTTGAAGGATATTGGGGGATGTTACTTGACAAATATGGTTTACAAGATAATGCATGGCTTCAATCAATATTCAACATCCGGAATAAATGGGTTCCGGCATATATAAAGGATTCTTTCTTTGCAGAACTATCCACGACTCAAAGATTGGAAACTATGAACCAATTCTTCAGGAAGCATTTTGATTCTAAGACTCCTTTAATAGTTTTTATCAACAAGTTTAATGAAGTCAATGATACACGATATGAGAAAGAAGCAGAAGATGATTTTGCTTCTTTGAATACCCAACCAATTATGAAAACCAACTCTCCAATGGAAAAGCAAGCATGGAATATTTACACAAAATCAGTATTTGAGAAATTTCAGGTAGAACTAACTGAAGCTCTTGAGCACTATGCAGTTAAAATACAGGATGGACATATAAGCAAATACTCAATTGGAAAGGATGGAGATGTTAGAAATAGACATTTTGTTGCTTTTAATACATCTGAAAAAAAGGTGATCTGCACGTGTTTCAAATACGAGGTTTCAGGTGTTTTATGTAGGCATATGTTGGTCGTCTTGGTGCTGAATGGTGTAGTTTTAATTCCAGACCATCATATATTGAAGAGATGGACTAAGAAAGCGAAGAGTGGACTAGTGTCGATTGAACGAGGAATTGAAGTTAGAAGGTTTGGCCAAGATTCATCAAGTCAATGGTATGCTAATATTTTTAATGACGCTATCAACCTAGCAGCAAAAGGAGCAGCATCTGCCCAGGCTTATAAGTTTGCAAAGGAAATGCTACAAAAAGCTTTCTCAGATATTGTTGATCTTAAATCTTGTGCCGTAAGAACTTTAAAATAA

Protein

Gene

>g505241.t1
ATGCAAAGTATGGTTGTTGCAAACAACCACGCAACAAGTACTATCAATGTGCGGTTGTCTGAAACAATCACGCTTTGCCACCTCCGCGACGTCCGTAATTAAAAAAATAAAATAAATGTGAATGCTTAAAGCATTTGTGGACTCATCAAACTTAGCGTTAGTAGTAGTAGAATCACGAACTTTCAAACAATTTGTAGATTGAATTTGGATTTAAAACGACAAAGGAATAAAGTTTTTAGGGTTTAGGAGAAGAAGAGATGAGCGGGGATTTTTGGGCTTTTTTTTTTTTTTTCCCTATCGAGGAGGAAACTCAGCGTTCTTAGTTAAAATAGAATTAGCCTTCTAACTTTTCTCCCACTCTAAAAACTATTTTCTTCCTCCTCCTCCGCTGCCCTCAAAATTTCAGCCAACAGGTTAACATCTCAGTCTCTCCACGGTGAATTCTATAACTATCAGATTTCTTTCTTTCTTCTTCTTATTCTTATTCCTTTTCTTTTTTTCTTTTTTGTCGAAGTCTTTAGCTGTCTTCTATAATTCAGTTACACAAAAATGTTTGGCTCTTTCCATTTATCAAGACAAGTATTTCTCATCGATTTCGCTGTTTCCATGCAAATTGAACGTTATCTGGGTAGCAGATCGGGGTATCGATTTACATTCGTAACTGGATAAGTTCATAATGAATGTAGAATTTTTTTTTTTTGAAACTTATTTATTAAAAAAAATCGATTTTGGATTGATACACTACTTACGCATATCAAATTGTTGTACTTGACGATGAAAGTTCATTTTGAAGTAGAGAAACTAGAAAATTTATGCAATTGTTATTAGACCTTAAATACTTCAGTAGTACTGCGATTTCTTATATGTAAGCATTATATATGTAGATCCAACATTGAGCAAATAATTGCAACAAAGTTTACTGAATGAGAGTTGAAGTATCAACATTGATGGTCAATTTGAACATCTGTCGGAGCTCAATTGCTTGATCATTGTGCTTGAACAATTGGTCTGTAGGAATAAAGATTGTGAATTATGTCAATACTTTTATTTGATTGGTGTAAAAACCTTGGTGAAAATGATACATAAAATATGATAGTTTCCTAAATCTAACCTTTGAACAACAAGTTCTAAGTTGATTGTGTGCGTTTTCTATCGTTGATAATACAACAAACCTGAACCATTGGATTTCCTCTTAATTCAATCTCTTATCTAAACACATTGAGATCCAATGGTTAAGGTATGTTGCATCCGAATAGCCGCTCCGACACAATTGGTGACACAATAAATCTCAACCATTGGATTGCCTCATATTTTAACTCCATGTGTGAGTTCAATGAGATCCGATGATCCAGACTTATTGTGTCACCAATTGTGTTTTATTTTGTATCCACATATAACAAATACACACAAACATATACATACACACACACGTGTGTATTAGCTACACCTCATTTTGATTACACCTCAATTCCCATTTAAATAACTGGATGAAGAAATAATAGGATGAAATGACAAGAGAAAGAAACTATAATTATTTAAACGGAAAATAATGGGAATTGAGGTGTAGCTGATCCTTGCCATATGTATGTATGTATGTATTATATGTATATATGTACATATATGCCATGTTACAAATTTAGCCAAAGCAAATTGTTGATGATCTTTGGTAAAGAAACTGAACTATCTTCTAGTTTAAGGAAAACTTGAGATCTTGAAGAAATTAAGTGTACTCTTGTTAAAAAAACTGGAGTTCAGTTTTTTATTTTAATCACTGGTGTAAAAAGCCACTGCTAAAGCAGAAATAACTCTTTATCCAAATCACAGCGATTCATGGACTACAGTTCAAGTGAAGACGACAAACTCATAGAAGACTTCACTGATATTGAAGAAGATGCCTCAGTCGCTGGAGTCGATCAGCATGCACCACATCATTTTCTTGAGCATGGAGAAAACTCAATGGCTTCTATAGATACATCCAACGGAGACCTGTTCTCTGATGAAGCAGATATAAAAATCCCAGAACCTTTTATAGGTATGGTTTTTGATTCCGATTCAGCTGCAAGAACATTCTACAATAACTACGCAATTCAACTAGGATTTGGAATCCGTGTCGCGCGGTCTCGTAGAGAAAAAAGGAAAGGTGTAGATGTATTGGTCATGAAGAGATTTGTATGTTTAAAAGAAGGGCATCACAAGAAGAAAACCATGGATTATGCCATAAAAAAGAAAAGGAAGCGTCTTTCTGTTAGGGATGGGTGTCCAGCAATGATGGAGGTGGTTAGAAGAGCGCCCGATAAATGGGTCATTACTAAGTTAGTATTGGATCATACTCATGTTACTGTAAGTCCTGATAGAATTAATGACATTCAATTTAATCGCTTATCAGGTAAAGATAAGGAGCACGATGACTGCTTAGATGAAACGAGGTTAAAAGTATTTGGAGGAGGAGATGCTCAAATTCTACTCGAGTATTTTAGAAAAGCTCAAAGTGTGAATTCCGGTTTCTTCTATAATATGCAAGTTGATAGTAGGAACCGTATAACCAATATATTTTGGGCTGATGTAAGAGCTAGACTGGCGTACAATTATTTTGGAGATGCTGTAACATTTGACACAAGCTATAAGAAGAATGAGAATATGCTGCCATTTGCTACATTTATAGGTCTAAATCATCATGGGAAACCTGTTAATTTTGGATGTGCTTTGGTTATCGATAAGACTAAATCATCTTTCACATGGTTGTTTGAAACTTGGAGCAGTGCTATGTATGGACCTCCACCTTTGTCATTTACTACAGATCAAGGCAACGCTATAGAGGCAGCGGTTGCTAAAGTCTTTTCTAATACTCGTCATAGATTATGCAAATGGCGCATTTTATCACGTTGCAAAAAGAAACTGTTCGGCATCTATCCTAGATATCCCACTATTTATCATGACTTGAAAAAATGTGTAATTAGTTCTGATACACCCGATGCTTTTGAAGGATATTGGGGGATGTTACTTGACAAATATGGTTTACAAGATAATGCATGGCTTCAATCAATATTCAACATCCGGAATAAATGGGTTCCGGCATATATAAAGGATTCTTTCTTTGCAGAACTATCCACGACTCAAAGATTGGAAACTATGAACCAATTCTTCAGGAAGCATTTTGATTCTAAGACTCCTTTAATAGTTTTTATCAACAAGTTTAATGAAGTCAATGATACACGATATGAGAAAGAAGCAGAAGATGATTTTGCTTCTTTGAATACCCAACCAATTATGAAAACCAACTCTCCAATGGAAAAGCAAGCATGGAATATTTACACAAAATCAGTATTTGAGAAATTTCAGGTAGAACTAACTGAAGCTCTTGAGCACTATGCAGTTAAAATACAGGATGGACATATAAGCAAATACTCAATTGGAAAGGATGGAGATGTTAGAAATAGACATTTTGTTGCTTTTAATACATCTGAAAAAAAGGTGATCTGCACGTGTTTCAAATACGAGGTTTCAGGTGTTTTATGTAGGCATATGTTGGTCGTCTTGGTGCTGAATGGTGTAGTTTTAATTCCAGACCATCATATATTGAAGAGATGGACTAAGAAAGCGAAGAGTGGACTAGTGTCGATTGAACGAGGAATTGAAGTTAGAAGGTTTGGCCAAGATTCATCAAGTCAATGGTATGCTAATATTTTTAATGACGCTATCAACCTAGCAGCAAAAGGAGCAGCATCTGCCCAGGCTTATAAGTTTGCAAAGGAAATGCTACAAAAAGCTTTCTCAGATATTGTTGATCTTAAATCTTGTGCCGTAAGAACTTTAAAATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249250.1	3.6e-266	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8.1	1.7e-127	Protein FAR1-RELATED SEQUENCE 5
trEMBL	A0A8B9AD48	2.2e-249	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38180.1	36.97	3e-125	446	FRS5	FAR1-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g505241	AT4G38180.1	641	357	8	72	669	53	689	36.97	3e-125	446
g505241	AT2G27110.2	633	349	10	62	669	30	631	36.02	2e-113	406
g505241	AT2G27110.1	633	349	10	62	669	30	631	36.02	2e-113	406

Ortholog group

Species	Genes
Allium cepa	g228875.t1; g415141.t1; g457546.t1; g481319.t1; g481320.t1; g505241.t1; g519661.t1
Allium fistulosum	AfisC1G02521; AfisC1G05889; AfisC1G05909; AfisC1G06551; AfisC2G06359; AfisC3G06359; AfisC4G01117
Allium sativum	Asa2G05399.1; Asa7G02936.1
Arabidopsis thaliana	AT4G38180.1
Oryza sativa	LOC_Os03g45300.1; LOC_Os03g50900.1; LOC_Os06g39680.1; LOC_Os06g49550.1; LOC_Os08g06930.1; LOC_Os08g06930.2; LOC_Os11g14020.1; LOC_Os12g12380.1; LOC_Os12g12380.2; LOC_Os12g12380.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	103	192	72.0	4.7e-20
PF10551.6	MULE	Domain	281	372	85.5	2.5e-24
PF04434.14	SWIM	Domain	573	592	18.9	0.00077

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network