result

Gene information

Detail information of g506332

Location

Gene	Chr	Start	End	Strand
g506332	Scaffold_88968:HRSCAF_472054	180202	182851	+

Sequences

CDS

Protein

Gene

>g506332.t1
ATGGAACCTAATGAAGGAGGATCAACTCAAGAATGCATTAAGGGGGATGACATTGAAACATTGAGCTGCCCAAACTCAAGATTGTTGGAAGTAAGTAATCTTATGTCCAATAATGGAGTTTTAGCTTCAAGTTCAAATTGGTTAATAAACCCTAATCCGCAAAACAACACTGATAAAAAGGAATTAATAAGTAATGAAAATGTTGCAATTGCTAAAAGTTCTGGACTGAAAGCTATTACATCCGAAGAAGTGAACAATAACAAACATATGCTAGCAGAAAGAGAAAGAAGGGGAGAGATGAAAAGCATGTTTGATGAACTTAATTCACTCATCCCAAATCTTCCTCCTAAGGTATGTATCAATTGAGTTTACTTTTTTTTCTTATTAAATGTAACATATTTCAAAGATATGCAATGTTGTTTTAAAAATAATCGTATGTTACCTCAGAAAAATTGCATTCAACATAATTTTTTTTATTATTATAACAACGAACCTTCATGCTATAAAACTGACTTTCCCAGATCATGCCTTGTGAAATTTGCCTTTACCTATACTGTAATTTTATTAATTAATTAATATAATCTGAAATGTTGATATTGTGTCTAATATAATTTAGTTAATCCTTCAAAGAAGATAATTATCCCTAACTAGATCCAACATATTGATTCATGGATATGCAAAATTTGGATGCAATTCAATCGGGTCTATATATCAAACTAGATCCTGTCAAAACCATACTTGTAATAAACATAGTTAAACGTAAATTATTGTTAAGTTTGAGTGATTTGGATAAGTTAGATTTATATTTATATAACGTTTTCCTTTAAGACTTTTAGTTTGAAACTGATTAAATGTGACGTTTATCGTTTACTATATTATCTCTAACTGTATGACATGGTTGATCTTTATATGGTTCCATCTAGGCTTAATATTACCCATTGAATATTTAATTTCCCTATTTAGGTACTGAATTTGGATTATTATATGTTTAGTCAATAGGAAGATTTATAAGGATGTGTATTTCTTTTTAAAAGATAATAAAATGCTATGATTTATAATAATGTTCATATTATCATATATGAGTGTAAGCATGATATTGCATTATGTACCATGTTACAATTACTTTAGCACGAAAAGAACATCACGGATTTTAGGGGAAAATATCTTAGTAATCAAATTATAAATTACCCTTGGATCCACCTATAAATTTATATATTTCCATCTTTAATGTCATGGTCAAACCCGAACATATTAAGATGTGCAAAATGATTCTGAACCGGGGAAATTTTATCTTACTCAAAAAAATTTCGAAGGGCCCACATATGTTGTGTATTTCTAATAATTTTCCAATTAGAAGGGATAATTGAGGAACTAAGATTTTTAAACCTTTTAGTATAATTTTTTGTATCTCAATAAATTAAAATTTCTAAATCCTATTCCTCTGTATCCTTGAGCATTAACAAGAACGGAACTATTATCATAAAATGATGGAAATAATAATATAACTTCAAATGAAATTAAAATAAGATAGGTTTAATATAATAAATTATAAAATATGCACCAAAAATATTAATTAAAAATTTGAATTTTACTTTGAAATGCCAAGATGTATTTGTCTTTGATTAGCTAATTTTGAATATAATTAATGTCAATATTTATATATTTGACCTAAGGCTTTACCACATGTAACAATTCTTTTATATATTCGAAAAAAACTAAAAAGATTTTTAAATTTATCTTATATATCTGTGGGTAGGGCTATGGTCTCCAACCTTTTGTACATGAATGTTTGTACATTGGACTATACTTGCTTAATTAGCTAGTTATTAGTGTAACGACAATTTCATTTATACCATTTGCACTAAGGATAAGTATAAGATAAAATAATGTATTTGTCTATTTTTATGAGTATGCTTACCTTCTATTTTAAAAATAATAATATAAAGACCTGGATAGTTAACATAAATAAATAAATAAAGTAAAATAAGTTAAAATAATTAATTTTTTCCTATTTTTACTCATGAGTTGTCCATATTACTTCAATCAAATTAATACGATCTCAAACAGATATAGGTAAGATGGACTAATTTTGTAGATCAACTTACATAGTTATTTTTGTCATTTCTTTAAAAATAAGTTAAAGGTAAAAAAACTTAATTATTATTAAGGGGACGTGAAAGAAGTAGTTCAGAGAGATGAATTTACTATTTCAAAAATATTACTTATGCTATAATTTGTGTTAATACAGGCAAATCGGTGTAGCATTGTGGATGAAACGATTAGCTATATAAAATCTTTGGAACAAACCCTCCATCGGCTTGAAAGAAAAAAACAAGAAACAAAGCAAGCAATGGAGAAAAAAGACGCGCCTTATATTGGAAACCCACCTCCCTTGACACCGATGCCCCATGTTTCTAATGCTTTTAGCACTTGGACTTGGGGAAACAATATCACACTCAATGTGAGTGGCACGGAGGCATACCTCAACATTTGTACTTCTAAGAAGAATGGGCTTATGACGAGCATCGCCTCTGTGTTGCAGAATCATCGTATTGAAGTGGTTTCAGCTCAACTCTCTTCTAATAATCTTAACTGCATGTACAATATACATGCTCATGTAAGCTTTTTACTCATCACTTTTAATCTATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010930934.1	1.8e-26	transcription factor bHLH95
trEMBL	A0A6I9RRK7	1.3e-26	transcription factor bHLH95

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G49770.1	52.17	5e-15	78.2	RGE1;ZOU	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g506332	AT1G49770.1	69	33	0	82	150	67	135	52.17	5e-15	78.2
g506332	AT1G49770.1	67	40	2	176	241	210	275	37.31	7e-07	50.8
g506332	AT2G22760.1	146	97	3	80	221	111	253	28.77	1e-10	63.5

Ortholog group

Species	Genes
Allium cepa	g143051.t1; g237597.t1; g506332.t1
Allium fistulosum	AfisC2G06518
Allium sativum	Asa4G03935.1; Asa6G03908.1; Asa6G03915.1
Arabidopsis thaliana	AT1G49770.1
Oryza sativa	LOC_Os02g34320.1; LOC_Os04g35010.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	88	135	37.6	1.4e-09

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009790	P	embryo development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009889	P	regulation of biosynthetic process
GO:0010154	P	fruit development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0048316	P	seed development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network