result

Gene information

Detail information of g509226

Location

Gene	Chr	Start	End	Strand
g509226	CHR3	2632890	2634999	-

Sequences

CDS

Protein

Gene

>g509226.t1
ATGGAAGAAATTATAGCTAATACCCTTGATTCCCCTGGATCTGAGTGCAAAACCCTACTTCATGGCCGCTACGAACTCGGCCGACTTCTAGGGCACGGAACGTTCGCGAAAGTATATTTGGCGAGAAATCTGAAGACGAATTTGAACGTCGCCATGAAAGTCGTGGCGAAAGAAAAGGTTATAAGAGTAAACATGATGGAGCAGATTAAGAGAGAGATTTCGGTGATGAAAATGGTTTCGCACCCCAATATAGTGGAGCTGCATGAAGTTATGGCAACGAAATCAAAGATTTTCTTCGCCATGGAACTTGTGAGAGGCGGAGAGTTGTTTTCGAGGATTGCAAAGCATGGGAGGCTGAAGGAGGAGTGTGCTAGGCACTATTTCAAACAGCTTGTGTCTGCCATTGATTTTTGTCATAGTCGTGGTGTTTATCATAGGGATTTAAAACCCGAGAATCTGTTACTGGACGATCAAGGTATTTTGCTGGTTCAACAATTTTTTATTATTGAACAGTGATTAAAATTTGAAATATTGGTGGATGTATAGGTAATCTAAAGATCGCCGACTTTGGTTTAAGCGCCTTTGCCGGGCCGGATGGATTGCTTCACACTACGTGTGGGACTCCAGCTTATGCTGCTCCTGAAGTCATTGCTAATAAAGGATATGATGGCGCAAAGTCAGATTTATGGTCTTGTGGGGTCATCTTATATGTTCTTCTTGCAGGTTTCCTGCCATTTCAGGTATATATCCATCTACCCATCACATAATTGTTTGTATATAAAATCAACAGGATTGTATTTTATGTGATTTTTATATATTTTTTCCAACTTGTACCAACTAGCAGGATTAAAGAGACTTCAAATTTCAGCTTATCTTTATAAAAATGATATTAACTGATTTTAATCTTTACCTGACGTCAACTATGAATAATATTGGCATTATTTGCAGATATTTTTGTAGAGTTCAAGTCTCTTAGCTAACCTCTAGTCATTGAACAAAATTTGGTTCACAGAGTTGCTTAGTTTATAAGTTTTTCTGTTGCTTGCATGAATGTTAATTTGTCCTTGTGCATGATGTATCAAGTGCCACATGGTGTGTATGATATGATATTTCTGTGAGCTGTTGTCGGACGTACTATCGTGTCTATCAGATTACCTGATGTAAAACTTGAAAACATCCAGAAGGGTAAATTTTACATTTAATGTATTGATGTAATGTATAGTTAAATGTAGTTCATTGCATGCGTAAAAAGTAGCTAAACTTGATATTGTAGATTCTGTAAACTGTTAAATGATTACAAATATAAAAGTGTTATATCATGTTTTCAAAGTTCAATCCCAAACTTCCATCTAATTATAACTTTAAAAAAATTAACATATCTAATGTGTTGATGCATGTTCAGATCTTAAAACATATTTATATTAAATTACAGGACGACAACATCGTGGCCATGTACAAAAAGATCTGCAAAGGCGACTTCAGATGCCCGCCATGGTTCTCCTCAGAGGCCCGTCGCCTAGTGACCAAACTCCTCGACCCAGACCCATCAACCCGTATCTCCGTGGACAAAATCATAGACTCCACATGGTTCAAAAAAGCTCCTCAAAAACCTCCATTACCACCACCGTTACCATCACCATTATTATCACCGCCTCCAAAAAAGGAAGACGAAGACCTACCCGAAAAATTCAATGCATTTCACCTAATCTCCCTCTCTCAAGGTTTCAACCTCTCCCCTCTATTCGAGGATGGCACGAAGAAAGAAGAAGACATAAGGTTCGCCACTAAAGAGCCAGTAAGTGGAGTGATATCGATACTAGAAGGTGTAGCCGCCAAGGCAAACGGAAGAATTAAGGTCACGAAAAGCTCTGCAGCTGGAGTTCGATTAGAAGGAAAAGAATCAAAAAGCAGAAAAGGGAAGCTCTCTGTAGCTGCAGATATATTCTCTGTTGCGCCTTCTGTTTTAGTTGTGGAGGTAAGAAAGGAAAAAGGAGATACATTTGAGTTCAAAAGCTTTTGCAGAGATGAACTGAGACCGGCACTCAAGGACATTGTCTGGGCCGCTGCCTCTGACCATCAACCAGGTGCATTGCCTTACTGTGTTAATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008783865.1	3.8e-176	CBL-interacting protein kinase 6-like
Swissprot	Q6Z9F4.1	1.4e-162	OsCIPK06
trEMBL	A0A8B7BRF9	6.1e-176	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30960.1	63.84	2e-153	538	ATCIPK6;CIPK6;SIP3;SNRK3.14	SOS3-interacting protein 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g509226	AT4G30960.1	437	138	8	11	435	11	439	63.84	2e-153	538
g509226	AT5G45820.1	428	164	9	19	432	7	421	55.37	1e-133	473
g509226	AT1G30270.1	437	188	7	22	439	29	459	51.26	1e-127	453

Ortholog group

Species	Genes
Allium cepa	g422193.t1; g509226.t1
Allium fistulosum	AfisC3G08542; AfisC4G04865
Allium sativum	Asa2G07107.1; Asa5G04117.1
Arabidopsis thaliana	AT4G30960.1
Oryza sativa	LOC_Os08g34240.1; LOC_Os09g25100.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	24	276	250.0	2.2e-74
PF03822.11	NAF	Domain	306	363	63.7	1.1e-17

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0018105	P	peptidyl-serine phosphorylation
GO:0018107	P	peptidyl-threonine phosphorylation
GO:0018193	P	peptidyl-amino acid modification
GO:0018209	P	peptidyl-serine modification
GO:0018210	P	peptidyl-threonine modification
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K07198	PRKAA, AMPK; 5'-AMP-activated protein kinase, catalytic alpha subunit	EC:2.7.11.11	Apelin signaling pathway	ko04371
			FoxO signaling pathway	ko04068
			PI3K-Akt signaling pathway	ko04151
			AMPK signaling pathway	ko04152
			mTOR signaling pathway	ko04150
			Autophagy - animal	ko04140
			Tight junction	ko04530
			Insulin signaling pathway	ko04910
			Glucagon signaling pathway	ko04922
			Adipocytokine signaling pathway	ko04920
			Oxytocin signaling pathway	ko04921
			Axon regeneration	ko04361
			Longevity regulating pathway	ko04211
			Longevity regulating pathway - multiple species	ko04213
			Circadian rhythm	ko04710
			Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network