result

Gene information

Detail information of g513454


Location
GeneChrStartEndStrand
g513454Scaffold_89744:HRSCAF_472830291203310681+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008789526.13.3e-285helicase-like transcription factor CHR28 isoform X2
SwissprotQ94BR5.13.6e-236Protein SNF2-RING-HELICASE-LIKE 2
trEMBLA0A8B7C1642.4e-285helicase-like transcription factor CHR28 isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G50410.161.280.0 806SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag168698.t1; g272525.t1; g513454.t1
Allium fistulosumAfisC2G01751; AfisC2G01766; AfisC2G03025; AfisC2G06830; AfisC4G05575
Allium sativumAsa5G01226.1; Asa5G01840.1; Asa5G04592.1; Asa6G00022.1; Asa6G04149.1
Arabidopsis thalianaAT1G50410.1; AT3G20010.1
Oryza sativaLOC_Os04g53720.1; LOC_Os08g08220.1; LOC_Os08g08220.2; LOC_Os08g08220.3

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily314826229.34.9e-68
PF13920.3zf-C3HC4_3Domain86390728.68.5e-07
PF00271.28Helicase_CFamily986108353.03.5e-14

Gene Ontology
AccessionOntologyName
GO:0006260PDNA replication
GO:0051276Pchromosome organization
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000278Pmitotic cell cycle
GO:0000724Pdouble-strand break repair via homologous recombination
GO:0000725Precombinational repair
GO:0000785Cchromatin
GO:0000790Cnuclear chromatin
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003678FDNA helicase activity
GO:0042623FATPase activity, coupled
GO:0003824Fcatalytic activity
GO:0004003FATP-dependent DNA helicase activity
GO:0017111Fnucleoside-triphosphatase activity
GO:0004386Fhelicase activity
GO:0004842Fubiquitin-protein transferase activity
GO:0005488Fbinding
GO:0046872Fmetal ion binding
GO:0016567Pprotein ubiquitination
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0016887FATPase activity
GO:0006259PDNA metabolic process
GO:0006261PDNA-dependent DNA replication
GO:0006281PDNA repair
GO:0006302Pdouble-strand break repair
GO:0006310PDNA recombination
GO:0006464Pcellular protein modification process
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006974Pcellular response to DNA damage stimulus
GO:0006996Porganelle organization
GO:0007049Pcell cycle
GO:0007154Pcell communication
GO:0008026FATP-dependent helicase activity
GO:0008094FDNA-dependent ATPase activity
GO:0008150Pbiological_process
GO:0008270Fzinc ion binding
GO:0061136Pregulation of proteasomal protein catabolic process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009605Presponse to external stimulus
GO:0009892Pnegative regulation of metabolic process
GO:0009894Pregulation of catabolic process
GO:0009895Pnegative regulation of catabolic process
GO:0009987Pcellular process
GO:0009991Presponse to extracellular stimulus
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0016043Pcellular component organization
GO:0016462Fpyrophosphatase activity
GO:0016740Ftransferase activity
GO:0016787Fhydrolase activity
GO:0016817Fhydrolase activity, acting on acid anhydrides
GO:0016818Fhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0019787Fubiquitin-like protein transferase activity
GO:0022402Pcell cycle process
GO:0033554Pcellular response to stress
GO:0030162Pregulation of proteolysis
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031329Pregulation of cellular catabolic process
GO:0031330Pnegative regulation of cellular catabolic process
GO:0031668Pcellular response to extracellular stimulus
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032268Pregulation of cellular protein metabolic process
GO:0032269Pnegative regulation of cellular protein metabolic process
GO:0032392PDNA geometric change
GO:0032434Pregulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032435Pnegative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032446Pprotein modification by small protein conjugation
GO:0032508PDNA duplex unwinding
GO:0033260Pnuclear DNA replication
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0036211Pprotein modification process
GO:0042176Pregulation of protein catabolic process
GO:0042177Pnegative regulation of protein catabolic process
GO:0042262PDNA protection
GO:0043167Fion binding
GO:0043169Fcation binding
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043412Pmacromolecule modification
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0044786Pcell cycle DNA replication
GO:0045005PDNA-dependent DNA replication maintenance of fidelity
GO:0045861Pnegative regulation of proteolysis
GO:0046483Pheterocycle metabolic process
GO:0046914Ftransition metal ion binding
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051246Pregulation of protein metabolic process
GO:0051248Pnegative regulation of protein metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0061630Fubiquitin protein ligase activity
GO:0061659Fubiquitin-like protein ligase activity
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070035Fpurine NTP-dependent helicase activity
GO:0070647Pprotein modification by small protein conjugation or removal
GO:0071103PDNA conformation change
GO:0071496Pcellular response to external stimulus
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:1901360Porganic cyclic compound metabolic process
GO:1901564Porganonitrogen compound metabolic process
GO:1901576Porganic substance biosynthetic process
GO:1901799Pnegative regulation of proteasomal protein catabolic process
GO:1902298Pcell cycle DNA replication maintenance of fidelity
GO:1902969Pmitotic DNA replication
GO:1903047Pmitotic cell cycle process
GO:1903050Pregulation of proteolysis involved in cellular protein catabolic process
GO:1903051Pnegative regulation of proteolysis involved in cellular protein catabolic process
GO:1903362Pregulation of cellular protein catabolic process
GO:1903363Pnegative regulation of cellular protein catabolic process
GO:1990505Pmitotic DNA replication maintenance of fidelity
GO:2000058Pregulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:2000059Pnegative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0140083
GO:0140096
GO:0140097

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15083RAD16; DNA repair protein RAD16EC:- --
K15173TTF2; transcription termination factor 2EC:3.6.4.- Thyroid hormone synthesisko04918

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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