result

Gene information

Detail information of g518599

Location

Gene	Chr	Start	End	Strand
g518599	Scaffold_90372:HRSCAF_473458	293035	296691	-

Sequences

CDS

Protein

Gene

>g518599.t1
ATGACTCGGTGTGATTGCCAAGAATCGAACCCTTCATCCCTCTATGAGGGAGTTGAATGCGGTAAATTAATTGATATAACCATTATATTACTTTATGCGTAATAGTATCTTATGTATTTAATAACTTGTTGAAAAACTTATTTTTGGTCAAAAAACGAAGTTGCGGTCGTTTGACTCTAAGGTGTGAACTCAGCCTTTAGTAATACTTAAATAATTGAAATATCAAAGCTTTTACGAACCTTGCAAAGCAAAGTAGTGGACATGAGTTCAGTCGCTTATAAATTATCTAGGTGGAATCCAATTTCTAATCCTTTAAAGCAACACTCTTAAGCAACGATATATTATGCACGTTTTTTGCTTTGTCATCACTATACCGCTTAGATATTTATAGCTTGATCAATTGTCAAAACTCTATTGGTACTCGTATTCAATTGTGAAGTCAAACATTAAAGTCAATTACGGTGATTACCAAGTATCGATAAACCGATTTAAGACTTTGATTTTACGTGACTACCAATTACGGTAATACTAACCTTCTATTCAAAGAAGACAAATTGTCACTTGAATGGTTTTTCACTTCAAGCAGTTCAACTTGTATCCAATTGTAGGCTTAACACGATGACGTAGTCGTGTGATTGACTATAATCAAAATATAGTTTAGTTCCTAAAGATTTATAGTATTTTCAAGTCAAAAAACCACCATATCGTCACGTGAGATCTTCTGTTTGACTTTTAACAAATATAAGACTCTCAGCGAGTTGTTTTATATATCAAGGAGTTGACTTTATTAGATCAAATGGTAAGCAAACATAAGTATAGCCTTATGTTTCTTTTTTCTTTTCCATAGAGCAACAAATCAATTTTCAATCCATTCCGTGTTCATTTAAAAATCAAACTTCTAATTAGTATTAGCAAATGCATTTTAGTTACTCGCTTTATTTAGGTGTAATTAATCACATAAAATTGATTACACTAACTTAAGCATATGTCAGATCTAATTATAGTATTCTTTAAAAATAAACAATCATTGAGCATATGCCAGATCTAATTATAGTATTCTTTAAAAATAAACAATCCTTGAGCATATGCCAGATCTAATTATAGTATTCTCTAAAAATAAACAATCAAACTAATGTCATCACCATAAAAAATTTCTCAATATCAATATTTGTCAATATTAAATAATGTAAATATTTCTTAGATCAAAAATTAGTATTAAAAAATGAATTTGCAAAAATACAATCATATATAATTGAATGGATCAAATTATGTATAATTGTATATTGCGTCAAGTTGGCTAAATCAAGCAAATTTGATCAAAATGAATCCCATTGATTAATTAGATCCACAAGGATTGGATAAATTTTCTCCAAAAAGAGAAACAGATCGCACTAAATAATATCACAACCATATACAAATTTATGTCCAAAAAATGGACAACAAACAAATCAAAATCAATGGATGTGAAACGATCTATGATCAACTTACAAAAAACAATTTTAATTAATAGATTTACAAAGATTCATGATTGATGTCAAAAAATTAATCTCAAACAACTTATTAAAATACATAGACTTATATATCCGAAAATAAATCCAAATATTCTACAAACAATATAGAAATGAAAAATAAATCCAAATGTCGTATAAATAATAATGAAACAAAATAATCTCACTCACCCTGAATCAAAAATAGATCTGAATCTAAACATAACTAAAAGAGAAATACAAAAAATAAATAAAATCAACTTTTTTCAAAGAAATCAACAATGGATGGCTTTCATTTTATTATATAAAAAATCTAATACAAATTAGATTTACTCAACAATAAAAGGCTACATCTAATCTTACCACCCACATTGAGTTCATCGGGGAAAATAAGAGAACATAAATAATTAGATTGTGGGCATATCTAAATCAATGAAATAGCTAAGACAAGAAAACGATATGTATTAGATCTTCCAAATTGAATTAGGTTTTGTATAGAAGAGGTAAGAGAAATTTTAAAACCGGCGCAATTTTAAAACCATAAGCTCATATTTATGATAGTTTGATATTTTCAATTTAACCCTTCAACAAACTGAAATGTCACTTCAATGCCTATGCATTAATGCTATGACAATTATATTTTTAAATCTTACCGATTTAATTTAAATTAAATTCTGATCAATTTAATTATGATTTATGGAAAATAACAATAATATATTTTATTTTACACTTGGTACTCTCACTTGTTAAATTTTCCAACATGAATAATTCAACTACACTAGCAATCGGTTTTTCTACAGTGCGAAGATAGTTTCAGCAGATGATAAAAAATGAAATACCGAGTTCATGTCGGTAAATGCTTTTCATTCCACCAACCTATGATTAAATAAGTAAAATCATTAAGACCTCATCAGGTTCAAAACTCAGCGAGACTTATTTTCGTAGGGTTCAATTTTGATTTCTTTACATGTTAGAAGGAAGAAAGGAAAAATCTCCCTTGATCGTTTAGGATGTGTAGTTCAAAAGGTAAAGCATGCCAGCAATCCCAATCTCCAGCGAATGCTATAATGCATAGATTAGACGCACATGCAAGCAAGTCGTTTTCTTGATAAAGATAAACTCATGCCAAACAACAAGCGACACGTTCACTTCTTCTTTATGTTTCCCGAGTAACAAAACCGCATATACCACCAACTTCCTTAACAGTGCTTCAATTCACTACAACTCTACCTATAAACAGTAAATCCCAAATTTGTAATTATCGTCATATTCATGACCAATTAGTTGCCCTTCCTACTATATATCCCTTCTGCATTTACCTCAACACTCGGACCATAAAGAACAGTAAAAAAAAAACAAAATACGCTAGTGAAGAAAGATAGCATGAATCATTTGGATAATGATGCTATGAATGTTCTTAACTATGATCTTTATCCACAAATGCATGAAGGTACTTCGTTACAACTAGTTAGTTGTATATACTATGTCATATATGACCTTCCTCCATTTTCTTGTTCTTGTTTCATATATATGTGTGCGTGCGGTGTGAAATCATAATTAATATTTAATAGTATGTATACGCTTTGGCCAGGTGAGAAAAAAAGCAGGAGGAGGAGAAAGAAGGCAAAGGCAGAAGAGGGAGAAAGCAAGAAAAGAAAGCTAAGCGATGAGCAAGTAAAGCTCTTGGAGATCAATTTTGGTAAAGAGAGAAAATTGGATTCGGGTAGAAAGATGAGCTTGGCTTGTGAACTTGGACTGGACCCCAAACAAGTAGCTGTTTGGTTTCAAAACAGAAGAGCAAGGTGGAAGATCAAGCAACTTGAAGAGGAGTACGCTCAAATCAAGTCTCGACTTGACGCTGCTTTAATGGAAAAATGTCATTTTGAAAACGAGGTATTCAATTCTTCCATCACTTTCATCATTATATACGATAATAAATTATTAACAAATGCTACCTTTATTTGAGTTACAGAACACGAAAATGAAGAGGGAGCTGGAGGAGGTGAAGGAGCAACTACAGATGCTCACTATTGAAAACTCAATAGGTGGAAGTCCAAGTTCGTCATCAACTGGAAATTATCATTCATCCTTTGGAGAATTTGGGTTACCTAATGACATTATGTACATAAACGATCAGTATAATTACATTATGGATTATTGCTTGTTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	PKA59918.1	9.1e-30	Homeobox-leucine zipper protein HOX14
Swissprot	O23208.3	2.9e-25	Homeodomain transcription factor ATHB-40
trEMBL	A0A2I0AWJ5	6.6e-30	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G18550.1	46.71	1e-32	136	ATHB21;HB-2;HB21	homeobox protein 21

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g518599	AT2G18550.1	167	72	5	49	200	25	189	46.71	1e-32	136
g518599	AT4G36740.1	202	95	6	34	216	1	197	41.09	3e-30	128
g518599	AT5G66700.1	104	48	0	72	175	68	171	53.85	2e-27	119

Ortholog group

Species	Genes
Allium cepa	g304900.t1; g40933.t1; g463158.t1; g495598.t1; g518599.t1
Allium fistulosum	AfisC3G02091; AfisC3G02097
Allium sativum	Asa0G02720.1; Asa0G03165.1; Asa0G05429.1; Asa0G05913.1; Asa2G01739.1; Asa2G01744.1; Asa2G01892.1; Asa8G02397.1
Arabidopsis thaliana	AT2G18550.1; AT4G36740.1; AT5G66700.1
Oryza sativa	LOC_Os07g39320.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	75	128	55.8	2.7e-15

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009889	P	regulation of biosynthetic process
GO:0010033	P	response to organic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022622	P	root system development
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042221	P	response to chemical
GO:0048364	P	root development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network