result

Gene information

Detail information of g519605


Location
GeneChrStartEndStrand
g519605Scaffold_90490:HRSCAF_473576536290580923+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008790766.13.0e-81squamosa promoter-binding-like protein 16
SwissprotQ0J0K1.12.3e-46Squamosa promoter-binding-like protein 18
trEMBLA0A8B7C3832.1e-81squamosa promoter-binding-like protein 16

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G50570.150.933e-45 179SPL13;SPL13ASquamosa promoter-binding protein-like (SBP domain) transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag324042.t1; g519605.t1
Allium fistulosumAfisC2G01928; AfisC5G01443; AfisC5G06098; AfisC7G00933
Allium sativumAsa1G00760.1; Asa4G00969.1; Asa4G01000.1; Asa5G01689.1; Asa6G05722.1; Asa7G05643.1; Asa7G06666.1
Arabidopsis thalianaAT5G50570.1; AT5G50570.2; AT5G50670.1
Oryza sativaLOC_Os11g30370.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03110.11SBPDomain126199104.81.8e-30

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006355Pregulation of transcription, DNA-templated
GO:0007275Pmulticellular organism development
GO:0008150Pbiological_process
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009908Pflower development
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0048367Pshoot system development
GO:0048437Pfloral organ development
GO:0048438Pfloral whorl development
GO:0048443Pstamen development
GO:0048466Pandroecium development
GO:0048608Preproductive structure development
GO:0048653Panther development
GO:0048731Psystem development
GO:0048827Pphyllome development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process
GO:0090567Preproductive shoot system development
GO:0099402Pplant organ development
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.