result

Gene information

Detail information of g523232


Location
GeneChrStartEndStrand
g523232Scaffold_90942:HRSCAF_47402813104331318896-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020247886.18.4e-195casein kinase 1-like isoform X1
SwissprotQ6K9N1.11.5e-177Protein LOW TEMPERATURE GROWTH 1
trEMBLA0A5P1FR761.0e-194Protein kinase domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT4G28540.167.091e-178 622CKL6;PAPK1casein kinase I-like 6

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag30258.t1; g523232.t1; g69662.t1
Allium fistulosumAfisC2G00059; AfisC2G05319
Allium sativumAsa5G00132.1; Asa6G02821.1; Asa7G04144.1
Arabidopsis thalianaAT1G03930.1; AT1G04440.1; AT3G23340.1; AT4G14340.1; AT4G28540.1; AT5G43320.1; AT5G44100.1
Oryza sativaLOC_Os02g40860.1; LOC_Os02g56560.1; LOC_Os02g56560.2; LOC_Os04g43490.1; LOC_Os04g43490.2; LOC_Os10g33650.1; LOC_Os10g33650.2; LOC_Os10g33650.3

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00069.22PkinaseDomain1022784.19.3e-24

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000902Pcell morphogenesis
GO:0008152Pmetabolic process
GO:0016049Pcell growth
GO:0003674Fmolecular_function
GO:0003824Fcatalytic activity
GO:0016192Pvesicle-mediated transport
GO:0004672Fprotein kinase activity
GO:0004674Fprotein serine/threonine kinase activity
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006464Pcellular protein modification process
GO:0006468Pprotein phosphorylation
GO:0006793Pphosphorus metabolic process
GO:0006796Pphosphate-containing compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006810Ptransport
GO:0006897Pendocytosis
GO:0006950Presponse to stress
GO:0040007Pgrowth
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0008150Pbiological_process
GO:0008360Pregulation of cell shape
GO:0009266Presponse to temperature stimulus
GO:0009409Presponse to cold
GO:0009628Presponse to abiotic stimulus
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009741Presponse to brassinosteroid
GO:0009826Punidimensional cell growth
GO:0009850Pauxin metabolic process
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010817Pregulation of hormone levels
GO:0014070Presponse to organic cyclic compound
GO:0016043Pcellular component organization
GO:0016301Fkinase activity
GO:0016310Pphosphorylation
GO:0016740Ftransferase activity
GO:0016772Ftransferase activity, transferring phosphorus-containing groups
GO:0016773Fphosphotransferase activity, alcohol group as acceptor
GO:0018105Ppeptidyl-serine phosphorylation
GO:0018193Ppeptidyl-amino acid modification
GO:0018209Ppeptidyl-serine modification
GO:0019538Pprotein metabolic process
GO:0022603Pregulation of anatomical structure morphogenesis
GO:0022604Pregulation of cell morphogenesis
GO:0022622Proot system development
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032989Pcellular component morphogenesis
GO:0033993Presponse to lipid
GO:0036211Pprotein modification process
GO:0042221Presponse to chemical
GO:0042445Phormone metabolic process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043412Pmacromolecule modification
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0046777Pprotein autophosphorylation
GO:0048364Proot development
GO:0048589Pdevelopmental growth
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051128Pregulation of cellular component organization
GO:0051179Plocalization
GO:0051234Pestablishment of localization
GO:0060560Pdevelopmental growth involved in morphogenesis
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0098657Pimport into cell
GO:0099402Pplant organ development
GO:1901564Porganonitrogen compound metabolic process
GO:1901700Presponse to oxygen-containing compound
GO:0140096

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K08959CSNK1D; casein kinase 1, deltaEC:2.7.11.1 Hedgehog signaling pathwayko04340
Hippo signaling pathwayko04390
Gap junctionko04540
Circadian rhythmko04710
K08960CSNK1E; casein kinase 1, epsilonEC:2.7.11.1 Wnt signaling pathwayko04310
Hedgehog signaling pathwayko04340
Hedgehog signaling pathway - flyko04341
Hippo signaling pathwayko04390
Hippo signaling pathway - flyko04391
Hippo signaling pathway - multiple speciesko04392
FoxO signaling pathwayko04068
Circadian rhythmko04710
Circadian rhythm - flyko04711

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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