result

Gene information

Detail information of g52995

Location

Gene	Chr	Start	End	Strand
g52995	Scaffold_29717:HRSCAF_270723	208458	211148	-

Sequences

CDS

>g52995.t1
ATGGTCGTTACTTGGTCACCAGCATTTCCTACGAAAACGCTACAATTGAGGTTCATAGATGGGCATAGCTGGGCTACTTTCATCAACTGTTCCAGAAAGAAAAATGACACCATAGACAATCAGCATGGATCAGTTCCATGCCTTAGTCAAAACAACAGATTCGTCTACGTTTACAATGGGTACAGTGTCAATTCTCTTCTTGCTTCGTGTAGTTACATAACCATGGTTCCTGTAAGTGCTGTCGATGTGAATACTGTTGGAGATGGTATTTTCCAAACCTTTAAGGATGGGTTCACCCTTTCCTGGGAAGTTAAGAAACTTACAAGGTCGGAAATTATTCGTAATTGCCTTCATACAGCTCCGACGGAAGCTAGGTATCGTATGTGGCAATTGAACAAATTTGAGCACATAATATATCCCGTCCAGGTCGAGTATGAATTCGTTAACTGCATAAAGAAGACTCACGACTACGCCCTGTACAGATATTCCATTGTGTTCCTTGTGTTCTTTGACATAATATCAGCTTACTTAGTGCTTATAACACTCGGAAGATTAATATTTGGACCACTATGTATCTCTGTGTTCCTCATTTATGAACTATTGAAAATGCTTGCTCCTATCGACTCCGTAGAGACATTTCTACGCAATCAACAAAGTGCAACACCAACAAGATACGCCTACACCGACATAATTGCAATGACAAGGCATTTCAAGGATCAATTAGGGCAAGGAGGGTTCGGAACAGTTTACAAAGGAGAGTTACCTGGCGGTCATTTAGTTGCCGTAAAACTATTGGGTAAATCCAACGATAACGGTGAAGATTTCATCAGCGAAGTATCCACCATTGGTACGATTCACCATGTCAACGTCGTACGACTTGTTGGGTTTTGCTCGGAAGGCTCGCATAGGGCTATTGTTTACGAATACATGCGCAATGGCTCTTTGGATAAGTACATTTTCAATACCAAAGGAACAGAGCAAAAGTTCACGACGGAGAAGCTAAATGAAATAGCTCTCGGCATAGCAAGAGGAATAGATTATTTGCATCGAGGGTGTGATATGAGGATTCTACATTTCGATATCAAGCCACATAACATTCTCTTGGATGATAGTTTCAATCCTAAGGTCTCCGATTTTGGACTTGCGAAACTTTACCCTAAGGATTACAGCATGGTTTCCGCTTTTGCAGCAAGAGGTACTATCGGATACATGGCACCTGAACTTATTTCAAGAAGTTTTGGACTCATATCTTACAAATCCGACGTATATAGTTTCGGGATGTTGCTTCTTGAAATGGCCAGTGGACGAAGGAACTTTGACAACAAGGTGGAGAACTCGAGTCAAGCGTACTACCCTTCTTGGGTTTACGGTCGGCTCGAACAACCCAAAAACATGGAACTATTGGACGAGATCGAGATTGAGGACGTGGAAAGGAAGCTGTGCAAAGTGGGGTTGTGGTGCATTCAAATGGCGCCGAGCGCGCGTCCTTCGATGATGAAGGTCGTGGAAATGCTCGAGGGCAACGTTGATGCAGTGGACATGCCGCCTAAGCCCTTCCTCTTTCGTTCGCCCGTGCCAAACGTGGGTGATAGTACATTTTATTCTTCTTTCGGTGAAATTAAGACCATCTTTGAAACGTTCAATCCTGAAAAATCAGATAATATGGTTAACGTTGCGTTGATCGGTAAAGATACACGCAGCGGTGCCTCAATACTGTTTCTTTTAGGCACAAGAAAATATATCTATATCCGCCAGGTTAAAGTGTTATCTTGTATTAATTTTTGCATCCTAAATCTTTAA

Protein

Gene

>g52995.t1
ATGGTCGGTTAGAGCCTTTCAAGAAAATGATTGCTTTTCCTCTTGCGGAGAGCTACAAGACATCAGCTACCCCTTCAGATTAAAAAGCGATCCTCCTGACTGCGGAAATCTAACCTACGAACTCTCATGTATCGACAATCAACCGTTCTTGGAACTTCCTTCCGGTAACAGTTACTTGGTCACCAGCATTTCCTACGAAAACGCTACAATTGAGGTTGTTGATAAAAGCTTAGCAACTGGCAAATGCGACCTCCCTTTTGAAACTCTTACTGCCAGCTCTTTTCTAAATGGTTATAGGTTCATAGATGGGCATAGCTGGGCTACTTTCATCAACTGTTCCAGAAAGAAAAATGACACCATAGACAATCAGCATGGATCAGTTCCATGCCTTAGTCAAAACAACAGATTCGTCTACGTTTACAATGGGTACAGTGTCAATTCTCTTCTTGCTTCGTGTAGTTACATAACCATGGTTCCTGTAAGTGCTGTCGATGTGAATACTGTTGGAGATGGTATTTTCCAAACCTTTAAGGATGGGTTCACCCTTTCCTGGGAAGTTAAGAAACTTACAAGGTCGGAAATTATTCGTAATTGCCTTCATACAGCTCCGACGTAAGTATTCACCTTTATCTTTGTCTTGGATTATGTTGTTATAAATATGGGAAAATACACCGAGACACAAAAATAAACCCAAAATTTGATCTCTTTGATTTCCGCCTCGAATATAAATCAAGTCATATTCAATGATAAAGAATATTGTATCAAATTTTCTGTTTCAATAGTCGCTTCCTACAAATATTGATTTACATGATATATGTGTAACCTATGTTGCAGGGAAGCTAGGTATCGTATGTGGCAATTGAACAAATTTGAGCACATAATATATCCCGTCCAGGTCGAGTATGAATTCGTTAACTGCATAAAGAAGACTCACGACTACGCCCTGTACAGATATTCCATTGTGTTCCTTGTGTTCTTTGACATAATATCAGCTTACTTAGGTAATTGTTCTTGCCATTCGCTCACAATATTTTCATACCAACTATTCTACTTTACCCAAAATATTTTCGTCAAAATATTGGAATGTGAGAGAAAAATAAGTAACCCTCTTGAATTCTACATTTTGCATCTGAAATTGTGTATTCATACCTGATTTTTGTTACTTTATATTTTGGTCATCATAAAATCATTCAATTCTATCAATAAATATGGCTTCTTTTGCAGTGCTTATAACACTCGGAAGATTAATATTTGGACCACTATGTATCTCTGTGTTCCTCATTTATGAACTATTGAAAATGCTTGCTCCTATCGACTCCGTAGAGACATTTCTACGCAATCAACAAAGTGCAACACCAACAAGATACGCCTACACCGACATAATTGCAATGACAAGGCATTTCAAGGATCAATTAGGGCAAGGAGGGTTCGGAACAGTTTACAAAGGAGAGTTACCTGGCGGTCATTTAGTTGCCGTAAAACTATTGGGTAAATCCAACGATAACGGTGAAGATTTCATCAGCGAAGTATCCACCATTGGTACGATTCACCATGTCAACGTCGTACGACTTGTTGGGTTTTGCTCGGAAGGCTCGCATAGGGCTATTGTTTACGAATACATGCGCAATGGCTCTTTGGATAAGTACATTTTCAATACCAAAGGAACAGAGCAAAAGTTCACGACGGAGAAGCTAAATGAAATAGCTCTCGGCATAGCAAGAGGAATAGATTATTTGCATCGAGGGTGTGATATGAGGATTCTACATTTCGATATCAAGCCACATAACATTCTCTTGGATGATAGTTTCAATCCTAAGGTCTCCGATTTTGGACTTGCGAAACTTTACCCTAAGGATTACAGCATGGTTTCCGCTTTTGCAGCAAGAGGTATACTATCAGATAACCACTTATTATTACAAAACCATAACAAATAAGTGTTTCTAGGGTCTATTTTCATAAACTGTAAGCAGACTTAGTGGGAAAATTTTCTTCTAGTCCCTTGCTCGTATCTCATGATGTGGGGCTATTTTAAACAGGTACTATCGGATACATGGCACCTGAACTTATTTCAAGAAGTTTTGGACTCATATCTTACAAATCCGACGTATATAGTTTCGGGATGTTGCTTCTTGAAATGGCCAGTGGACGAAGGAACTTTGACAACAAGGTGGAGAACTCGAGTCAAGCGTACTACCCTTCTTGGGTTTACGGTCGGCTCGAACAACCCAAAAACATGGAACTATTGGACGAGATCGAGATTGAGGACGTGGAAAGGAAGCTGTGCAAAGTGGGGTTGTGGTGCATTCAAATGGCGCCGAGCGCGCGTCCTTCGATGATGAAGGTCGTGGAAATGCTCGAGGGCAACGTTGATGCAGTGGACATGCCGCCTAAGCCCTTCCTCTTTCGTTCGCCCGTGCCAAACGTGGGTGATAGTACATTTTATTCTTCTTTCGGTGAAATTAAGACCATCTTTGAAAGTGAGTAGCATTGGTTTTGGTTGTGTACATTCTTGTTGTATAAACGTGAGCGTTCAATCCTGAAAAATCAGATAATATGGTTAACGTTGCGTTGATCGGTAAAGATACACGCAGCGGTGCCTCAATACTGTTTCTTTTAGGCACAAGAAAATATATCTATATCCGCCAGGTTAAAGTGTTATCTTGTATTAATTTTTGCATCCTAAATCTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK81409.1	3.5e-201	uncharacterized protein A4U43_C01F28780
Swissprot	P93604.1	4.0e-101	Probable receptor-like serine/threonine-protein kinase LRK10
trEMBL	A0A5P1FW25	2.5e-201	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66980.1	49.25	7e-90	328	GDPDL2;SNC4	suppressor of npr1-1 constitutive 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g52995	AT1G66980.1	335	157	6	211	535	778	1109	49.25	7e-90	328
g52995	AT5G38260.1	328	145	6	224	544	310	629	51.22	1e-88	324
g52995	AT1G66930.1	369	160	8	172	520	284	637	47.15	8e-88	321

Ortholog group

Species	Genes
Allium cepa	g136913.t1; g280171.t1; g52995.t1
Allium fistulosum	AfisC2G00223; AfisC2G00233; AfisC2G00249; AfisC2G00258; AfisC2G00286; AfisC2G00298
Allium sativum	Asa0G02049.1; Asa1G03947.1; Asa2G04946.1; Asa4G03239.1; Asa4G03241.1; Asa5G00172.1; Asa5G00217.1; Asa5G00610.1; Asa5G00663.1; Asa5G00666.1; Asa5G00704.1; Asa5G00708.1; Asa5G01144.1; Asa6G04684.1; Asa6G04685.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g02300.1; LOC_Os01g02320.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	237	503	171.2	2.4e-50

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network